Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq233793 113 1e-19 seq177272 98.7 2e-15 seq283656 87.8 4e-12 >seq233793 Length=42987 Score = 113 bits (124), Expect = 1e-19 Identities = 159/221 (72%), Gaps = 7/221 (3%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||| || ||| || |||||||| || || |||||| | || || || |||| Sbjct 13241 CAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT--- 13185 Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 ||||| |||| |||| ||||| ||||||||| || ||||| ||| || || Sbjct 13184 GACACCATCGAGAATGTAAGGCAAA-GATTCAAGACAAGGAAGGCATTCCCCCTGATCAG 13126 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || | || |||||||| || ||||| |||||||||| | ||| || | || |||||| Sbjct 13125 CAGCGTCTCATCTTCGCTGGCAAGCAACTGGAAGATGGCCGCACTCTGTCAGACTACAAC 13066 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||| ||||| ||||| || |||||| | || || || Sbjct 13065 ATCCAGAAGGAGTCAACTCTCCATCTTGTTCTCAGGCTCCG 13025 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||| || ||| || |||||||| || || |||||| | || || || |||| Sbjct 11757 CAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT--- 11701 Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 ||||| |||| |||||| ||||||||| || || ||||| || || || Sbjct 11700 GACACCATCGAGAACGTAAAGGCAAAGATTCAGGACAAGGAAGGCATCCCCCCTGATCAG 11641 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || | || |||||||| || ||||| | || || || | ||| | | || |||||| Sbjct 11640 CAGCGTCTCATCTTCGCTGGCAAGCAACTCGAGGACGGCCGCACTCTATCAGACTACAAC 11581 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||| ||||||||||| || |||||| | || ||||| Sbjct 11580 ATCCAGAAGGAGTCTACTCTCCATCTTGTTCTCAGGCTTCG 11540 >seq177272 Length=310 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||| || ||| || ||||| || || || |||||| | || || || |||| Sbjct 235 CAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTTGAGCCAAGT--- 179 Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 ||||| |||| |||||| |||||||||||| || ||||| ||| || || Sbjct 178 GACACCATCGAGAATGTAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCCCCTGATCAG 119 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || | || |||||||| || ||||| ||||||| || | ||| | | || |||||| Sbjct 118 CAGCGTCTCATCTTCGCTGGCAAGCAACTGGAAGACGGCCGCACTCTATCAGACTACAAC 59 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||| ||||| ||||| || ||||| Sbjct 58 ATCCAGAAGGAGTCAACTCTCCATCTTGT 30 >seq283656 Length=776 Score = 87.8 bits (96), Expect = 4e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 ||| || || ||||| ||||||| ||| ||||||| || ||| | |||||||||||||| Sbjct 584 GTGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGACAGAGTGCGGCCATCTTCCAGCTG 643 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||| ||||||||||| || || || ||| Sbjct 644 CTTGCCGGCGAAGATCAGGCGCTGCTGA 671 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| | || |||||| ||| || | ||| Sbjct 772 AAAACATTGACGGGGAAAACCATCACCCTCGAGGTGGAACCCAGTGATACTATTGAAAAT 713 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || |||||||| || ||||| || || || || | || |||||| Sbjct 712 GTAAAGGCCAAAATTCAAGACAAGGAAGGTATCCCTCCCGATCAGCAGCGCCTGATCTTC 653 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| || | || ||||| ||||||| ||||| Sbjct 652 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTGTCTGACTACAATATCCAGAAGGAGTCC 593 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 592 ACCCTCCAC 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176933027751274