Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq316488 87.8 6e-14 seq281098 87.8 6e-14 seq268139 87.8 6e-14 seq208525 87.8 6e-14 seq58246 87.8 6e-14 seq239142 84.2 7e-13 seq301753 80.6 8e-12 seq321274 78.8 3e-11 seq274269 78.8 3e-11 seq139693 78.8 3e-11 >seq316488 Length=42967 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 24038 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 24093 >seq281098 Length=64800 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 4100 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 4155 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 4575 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 4630 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 5235 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 5290 >seq268139 Length=58028 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 33178 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 33123 >seq208525 Length=446 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 58 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 113 >seq58246 Length=318 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 181 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 236 >seq239142 Length=395 Score = 84.2 bits (92), Expect = 7e-13 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 299 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTAAAGGTCCCTGGTTCAA 249 >seq301753 Length=28707 Score = 80.6 bits (88), Expect = 8e-12 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCC 2829 |||||||||||||||||| | ||||||||||||| |||||||||||||||| || Sbjct 21867 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAAACC 21814 >seq321274 Length=31803 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 25043 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 24993 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 25222 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 25172 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 25402 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 25352 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 25763 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 25713 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 26687 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 26637 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 27492 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 27442 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 27850 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 27800 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 28028 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 27978 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 28563 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 28513 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 28739 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 28689 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 29276 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 29226 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 29459 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 29409 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 29816 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 29766 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 29994 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 29944 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 30529 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 30479 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 31404 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 31354 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 31764 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 31714 >seq274269 Length=118065 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 28976 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 28926 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 29363 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 29413 >seq139693 Length=419 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 331 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAA 381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15793642046130