Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq197649 107 2e-18 seq302008 104 3e-17 seq320246 91.5 2e-13 >seq197649 Length=5997 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 146916 TTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTC 146975 || ||| || || | ||| || || || || || || || ||||| |||||||||||||| Sbjct 3116 TTCCAGTGGTTCGATGTGATTCAGATACACATGAGCATCTCCCAGTGTGTGCACAAAGTC 3057 Query 146976 CCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTAT 147035 || || || ||| ||||| || || | |||||||||||| || || |||||||| || Sbjct 3056 TCCTGGTTTGAGGTTAGTCACATGTGCTATCATGTAGGTGAGGAGGGAATAGCTGGCAAT 2997 Query 147036 GTTGAAGGGGACCCCCAGGCCC 147057 ||||||||| || || || ||| Sbjct 2996 GTTGAAGGGCACTCCAAGACCC 2975 >seq302008 Length=60799 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 146916 TTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTC 146975 || ||| || || | ||| || || || || || || || ||||| |||||||| || || Sbjct 7020 TTCCAGTGGTTCGATGTGATTCAGATACACATGAGCATCTCCCAGTGTGTGCACGAAATC 7079 Query 146976 CCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTAT 147035 || || || ||| |||||||| || | |||||||||||| || || |||||||| || Sbjct 7080 TCCTGGTTTGAGGTTAGTCACGTGTGCTATCATGTAGGTGAGGAGGGAATAGCTGGCAAT 7139 Query 147036 GTTGAAGGGGACCCCCAGGCCC 147057 ||||||||| || || || ||| Sbjct 7140 GTTGAAGGGCACTCCAAGACCC 7161 >seq320246 Length=162 Score = 91.5 bits (100), Expect = 2e-13 Identities = 120/163 (74%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 146875 TTGAGCTTGGGGAAGGGTCG-GGGGTTC-CTGGCCAGCTGAATTTTCAGGGGCTCCACGT 146932 || ||||||||||| || || || |||| || || ||| || ||| || || | || Sbjct 2 TTCAGCTTGGGGAACGGACGCGGTGTTCGCT--TCAACTGTTCTTCCAGTGGTTCAATGT 59 Query 146933 GGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGG 146992 | || || || || || || || ||||| |||||||| || || || || || ||| | Sbjct 60 GATTCAGATACACATGAGCATCTCCCAGTGTGTGCACGAAATCTCCTGGTTTGAGGTTAG 119 Query 146993 TCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTAT 147035 ||||||| || | |||||||||||| || || |||||||| || Sbjct 120 TCACGTGTGCTATCATGTAGGTGAGGAGGGAATAGCTGGCAAT 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581133669681600