Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq295142 309 4e-79 seq305029 260 2e-64 seq129531 205 1e-47 seq289945 167 3e-36 seq256343 111 2e-19 seq306440 104 3e-17 seq36655 104 3e-17 >seq295142 Length=2525 Score = 309 bits (342), Expect = 4e-79 Identities = 610/895 (68%), Gaps = 17/895 (2%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 |||||||||||| ||||||||||| || ||||| || || || || || ||||| Sbjct 1493 CATAACTCCCATCAGCTGGTATTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCTTC 1552 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 || || || ||||||||||| || || || || |||| | | |||||| | | Sbjct 1553 CAGCGAGATGTTTTCCATGAAGTCGAATGGGTTCTCGACATTCCAGATCTTTTTACAGTC 1612 Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATT 39492 | || || ||| || || || ||||| || ||||| || ||||| | | ||| Sbjct 1613 AAGCTCAACAAGCAACCTGTCGGCTACAAACTCGATGTAGGTCTTCATGAGGCCGGCATT 1672 Query 39493 CATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGC 39552 ||| || ||||| |||||||| ||||| || ||||| | |||||| | || || Sbjct 1673 CATACCGATGAGAGAGCAGGGTAGAGCGTCCGTCAGGAACTCCTGTTCGATCTTAACCGC 1732 Query 39553 CTCTGTTATTATC-----GATGTTA-CTACCTCATCACTCGGTGGATGCAATAAATGTTT 39606 || | || ||| || | | || || || || | || || | ||| || Sbjct 1733 TTCCCTGATGATCCCCTGGACATGAGCTTCCG-ATGGCTTGTTGT-TG----AGATGCTT 1786 Query 39607 AAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGA 39666 ||||| | || || ||||| || || || ||||| ||||| || || | ||| || || Sbjct 1787 GAACATCAGACATGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGA 1846 Query 39667 AAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCC 39726 || || || || ||||| ||||| || || |||||||| || || || ||||| || || Sbjct 1847 GAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAAGGAACC 1906 Query 39727 AGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT-TG--- 39782 || ||||||||||| ||||||||||| || ||||| | || | | | || | || Sbjct 1907 CGAGAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCT-TGTACCAAAGTCTGCGC 1965 Query 39783 TATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTT 39842 | || || ||||| | | | ||||| | |||||||| | ||||| ||||| || | Sbjct 1966 TGTCGCTACTGATCCAGTCCAGCGCCCATTGCGCTTTCTTGGTGACACACGGCATGGTCT 2025 Query 39843 CTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACA 39902 | | ||||| ||||| |||| | | | | | |||||| | ||||| || || | | Sbjct 2026 CAACGGCATTGAAGAGGTAATCTCTCTGAGCTGAATCTTTGATGTATGTGTCGATGAGTA 2085 Query 39903 GACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTG 39962 |||||||||||| |||||||||||||| || ||||| || ||||| ||||| || | Sbjct 2086 ATGAATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAACACCTCG 2145 Query 39963 CTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCAT 40022 | || | ||| || || ||| | ||| ||||| |||| || ||||| || || |||| Sbjct 2146 CCTCTGCAATCTGCACTTCTTGGCTAAACCTTTCAACCAAGTTCTCATTGACAATACCAT 2205 Query 40023 CACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT 40082 | || || || || || || | ||||| || || | | |||| | ||| | | Sbjct 2206 CGCTTGCAGCGAAGAAAGCAAGAACATGCGAGATGAAGTGCCTCTCATTGTCTGTGAGCT 2265 Query 40083 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142 | ||| | | | ||||| || | ||| || || || || ||||| || || |||| Sbjct 2266 TGGCCCAATGGTCCAAGTCTTTGGAAAGATCGACCTCCTCGGCCGTCCAGAAGGATGCCT 2325 Query 40143 CTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 | ||||| ||||| | | ||| || ||| ||||||| || || || || ||||| Sbjct 2326 CCGCCTTCTTGTAGAATTGCCAGATGTCATGATATTGGATGGGGAAGATGACAAA 2380 >seq305029 Length=127772 Score = 260 bits (288), Expect = 2e-64 Identities = 385/536 (72%), Gaps = 12/536 (2%) Strand=Plus/Minus Query 69298 ACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTC 69357 ||||||| || | ||| ||| | || ||||||||||| || ||||| |||||||| || Sbjct 94094 ACCTCATCAGGACTTGAATACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTT 94035 Query 69358 CCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTA 69417 |||| ||||| || |||||||| ||||||| ||||||||| || ||| | || ||| Sbjct 94034 CCCAAGTTTTGTTGGTTACTCTTCCTGTTACAATGGTCCTTGTACAGCATATATGGGGTA 93975 Query 69418 CCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCT-AGCATTTATTACGGT 69476 ||||| || | |||||||| || || | | ||| | || ||| || || ||| || Sbjct 93974 CCAGTCTCTGTTTGAGATTCAATGATGGCATACCACA-GAGCCTGGGCCTTCATT---GT 93919 Query 69477 CTTGTAACGCTT---CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCA 69533 ||| || ||| ||||| ||||| | || ||| ||| |||||||||||||| Sbjct 93918 CTTCCTACCCTTTCCTTCTTTCTCATACTTCTCGTAGAGCTTTTCAAATTCATCTCCCCA 93859 Query 69534 AACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTT 69593 ||| | || | ||||| ||||||| || ||||| | | ||| || ||||| | | Sbjct 93858 AACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGGGTCCAGTCACCATCAGCTTC 93799 Query 69594 AACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTAT 69652 ||| | |||||||| ||||| || ||||| || || ||| || ||||||| || ||| | Sbjct 93798 AACCCTCTTCATAAAGAGATCAGGGATCCAGAGGGC-ATAGAACAGATCTCGGGCTCTCT 93740 Query 69653 TTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATG 69712 ||| || || || || || ||| || | || || ||||||| |||||||| Sbjct 93739 GTTCCTCCTTGCCGTGGTTCTTCTTACAGTCTAAGAAATCATGGATATCAGCATGCCATG 93680 Query 69713 GTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGG 69772 | ||||| || || || | | | || || || ||||| ||||||||||||| ||||| | Sbjct 93679 GCTCTAGGTAGATGGCAAAGGCACCAGGACGCTTATTGCCTCCCTGATCTACATATCTAG 93620 Query 69773 CAGTGTTATTATAGACTCTCAGCATCGG-AATAATACCATTAGATTTACCATTTGT 69827 | || || || || || | ||||| || ||||| |||||| || || |||||||| Sbjct 93619 CTGTATTGTTGTACACACGAAGCATTGGTAATAA-ACCATTGGAGTTGCCATTTGT 93565 Score = 114 bits (126), Expect = 2e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 69298 ACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTC 69357 ||||||| || | ||| ||| | || ||||||||||| || ||||| |||||||| || Sbjct 95789 ACCTCATCAGGACTTGAATACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTT 95730 Query 69358 CCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTA 69417 |||| ||||| || |||||||| ||||||| ||||||||| || ||| | || ||| Sbjct 95729 CCCAAGTTTTGTTGGTTACTCTTCCTGTTACAATGGTCCTTGTAGAGCATATATGGGGTA 95670 Query 69418 CCAGTTTCAATCTGAGATTCGATAAT 69443 ||||| || | |||||||| || || Sbjct 95669 CCAGTCTCTGTTTGAGATTCAATGAT 95644 >seq129531 Length=564 Score = 205 bits (226), Expect = 1e-47 Identities = 380/550 (69%), Gaps = 17/550 (3%) Strand=Plus/Minus Query 39442 AATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTAT 39501 || ||| || || || ||||| || ||||| || ||||| | | |||||| || || Sbjct 543 AAGCAACCTGTCGGCCACAAACTCGATGTAGGTCTTCATGAGGCCGGCATTCATACCGAT 484 Query 39502 GAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTAT 39561 ||| ||||| || ||||| || ||||| | |||||| | || || || | || Sbjct 483 GAGAGAGCAGGGTAGGGCGTCCGTCAGGAACTCCTGTTCGATCTTGACCGCTTCCCTGAT 424 Query 39562 TATC-----GATGTTA-CTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAA 39615 ||| || | | || || || || | || || | |||||| ||||| | Sbjct 423 GATCCCCTGGACATGAGCTTCCG-ATGGCTTGTTGT-TG----AGATGTTTGAACATCAG 370 Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||||| ||||| || || || ||||| ||||| || || | ||| || || || || || Sbjct 369 ACAGGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAG 310 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| ||||| || || |||||||| || || |||||||| || || || ||||| Sbjct 309 CCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATCGCAGCAAAGGAACCCGAGAAGAA 250 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT-TG---TATCATTAT 39791 |||||| ||||||||||| || ||||| | || | | | || | || | || || Sbjct 249 GATGCCCTCTACTGCTGCGAAAGCAACGACCCT-TGTGCCAAAGTCTGCGCTGTCGCTAC 191 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||| | | ||||| | |||||||| | || || ||||| || || | |||| Sbjct 190 TGATCCAGTCCAACGCCCATTGTGCTTTCTTGGTGACGCATGGCATGGTCTCAACGGCAT 131 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 | ||||| |||| | | | | | |||||| | ||||| || || | | ||||| Sbjct 130 TGAAGAGGTAATCTCTCTGAGCTGGATCTTTGATGTATGTGTCGATGAGTAATGAATACA 71 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 ||||||| |||||||||||||| || ||||| || ||||| ||||| ||||| || | || Sbjct 70 TTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAACACCTTGCCTCTGCAA 11 Query 39972 TTTGTACCTC 39981 | || || || Sbjct 10 TCTGCACTTC 1 >seq289945 Length=532 Score = 167 bits (184), Expect = 3e-36 Identities = 287/412 (70%), Gaps = 5/412 (1%) Strand=Plus/Minus Query 68374 GTAAACTGAAT-GGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAG 68432 || ||||| || |||| || | || || ||| || || || |||||||| || ||||| Sbjct 411 GTGAACTGGATAGGGTTAGCA-GCTGGGCGTGTGCGAAGGTAATACATACCCGTCTTCAG 353 Query 68433 ACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTAT 68492 ||| |||||| | |||| |||||||| ||||| ||| ||| |||| || || || Sbjct 352 ACCCGATCTCCATGCAAAGAAGTGCATACTGGTTAGCTTGCCATAGTTTGGTTCAGCAAT 293 Query 68493 ATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTAT 68552 |||||||| | |||||||| ||||| ||| | || || | || | ||||| | || Sbjct 292 GTGAATATTAAGTGATTGACTCTGATCAATGTATGCACCGCGGTCAACAGCCATCTGAAT 233 Query 68553 AATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAG 68612 || | |||| || | || ||||||| ||||||| | | ||||| |||||||| | Sbjct 232 AACAGTCTTCTGTGAGATCTCCCAAACAGTCTTATACAATGCCTTGATGTCATCTGGGAT 173 Query 68613 -GCTCGTATTTT--GAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATT 68669 | | | || || |||| |||||| | | || | |||||||| ||||||||| Sbjct 172 TGATGGAATGTTCTGAATAGATCCAGAGTGAGCAATGAGCATATTCTTCATCTCATCAGA 113 Query 68670 CCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCC 68729 ||||| | || || | | ||||| ||||| |||| || | ||||| || || Sbjct 112 CCACAGACCCATGTCGGTAAGGTCCCTAAGAAGATGATGATTGACGACCTGAAACTCTCC 53 Query 68730 AGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 68781 || | ||| | ||| ||||| ||||||||||| || || || | |||||| Sbjct 52 TGAAAGCACACGACGCGTGTAGATATTACTGGTGTACGGCTCGATGGATTCA 1 >seq256343 Length=109058 Score = 111 bits (122), Expect = 2e-19 Identities = 164/229 (72%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| ||||| || || | ||| || || || || || || ||||| ||||| || || | Sbjct 31440 CCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCT 31381 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| || || |||||||| || || || ||||||||||| ||||||||||| || | Sbjct 31380 TGAGCCAGAAGATCGCAGCAAAGGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAG 31321 Query 39759 CAACAAGTCTCTCTCCGTAACT-TG---TATCATTATGTATCCACTTCTGTGCCCAATCA 39814 |||| | || | | | || | || | || || ||||| | | ||||| | Sbjct 31320 CAACGACCCT-TGTGCCAAAGTCTGCGCTGTCGCTACTGATCCAGTCCAACGCCCATTGT 31262 Query 39815 GCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 |||||||| | || || ||||| || || | ||||| ||||| |||| Sbjct 31261 GCTTTCTTGGTGACGCATGGCATGGTCTCAACGGCATTGAAGAGGTAAT 31213 >seq306440 Length=70067 Score = 104 bits (114), Expect = 3e-17 Identities = 116/153 (76%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCT 39751 || || |||| ||| || ||||||||||| || ||||| || || || ||||||||||| Sbjct 67538 CGTTTCTTGAACCAGAAAATGGCAGCAAACGAGCCAGAGAAAAATATTCCTTCTACTGCA 67597 Query 39752 GCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC--ATTATG-TATCCACTTCTGTGCC 39808 || ||||| || | ||||| || | | | || | ||| |||||||| | ||| Sbjct 67598 GCGAATGCCACCAACCTCTCACCAAAGGTACTCTCCTCTGATGCAATCCACTTGAGAGCC 67657 Query 39809 CAATCAGCTTTCTTCTTTACACAAGGCATTGTT 39841 ||||||||||||||||||||| | |||| |||| Sbjct 67658 CAATCAGCTTTCTTCTTTACAAATGGCACTGTT 67690 >seq36655 Length=16638 Score = 104 bits (114), Expect = 3e-17 Identities = 116/153 (76%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCT 39751 || || |||| ||| || ||||||||||| || ||||| || || || |||||||| || Sbjct 4060 CGTTTCTTGAACCAGAAAATGGCAGCAAATGAGCCAGAGAAAAATATTCCTTCTACCGCA 4119 Query 39752 GCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT--ATGTA-TCCACTTCTGTGCC 39808 || || || || | ||||| ||| | | | || | ||| | |||||||| | ||| Sbjct 4120 GCGAACGCCACCAACCTCTCACCGAAGGTACTCTCCTCTGATGCAATCCACTTCAGAGCC 4179 Query 39809 CAATCAGCTTTCTTCTTTACACAAGGCATTGTT 39841 ||||||||||||||||||||| | |||| |||| Sbjct 4180 CAATCAGCTTTCTTCTTTACAAATGGCACTGTT 4212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684137174510160