Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq295142 174 1e-38 seq129531 100 2e-16 seq36655 84.2 2e-11 >seq295142 Length=2525 Score = 174 bits (192), Expect = 1e-38 Identities = 397/588 (68%), Gaps = 11/588 (2%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | || || || |||||||||||||| |||||| | ||||| || || |||| Sbjct 2380 TTTGTCATCTTCCCCATCCAATATCATGACATCTGGCAATTCTACAAGAAGGCGGAGGCA 2321 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 || || ||||| || || || || ||| | | |||||||| | |||||| | Sbjct 2320 TCCTTCTGGACGGCCGAGGAGGTCGATCTTTCCAAAGACTTGGACCATTGGGCCAAGCTC 2261 Query 43820 AAACCACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGG 43878 | | |||| || | || || || || ||| | || || || ||||| ||||| || Sbjct 2260 ACAG-ACAATGAGAGGCACTTCATCTCGCATGTTCTTGCTTTCTTCGCTGCAAGCGATGG 2202 Query 43879 GATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACG 43938 || |||||||| || |||||| ||||| |||||||| || | |||| || | Sbjct 2201 TATTGTCAATGAGAACTTGGTTGAAAGGTTTAGCCAAGAAGTGCAGATTGCAGAGGCGAG 2142 Query 43939 ATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCT 43998 ||||| || ||||| || ||||| || ||||| || || || |||||||| | || Sbjct 2141 GTGTTTCTACGGGTTCCAGATTGCAATTGAAAACATCCACTCAGAAATGTATTCATTACT 2082 Query 43999 GATAGATACGTACATCAAAGA-TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAA 44057 || || || ||||||||||| | || | ||| || | || ||||| | || | Sbjct 2081 CATCGACACATACATCAAAGATTCAGCTC-AGAGAGATTACCTCTTCAATGCCGTTGAGA 2023 Query 44058 CAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT----TCAAA 44112 | | || || | | | | ||||| | ||||| || | ||||| | | || Sbjct 2022 CCATGCCGTGTG-TCACCAAGAAAGCGCAATGGGCGCTGGACTGGATCAGTAGCGACAGC 1964 Query 44113 TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG 44172 | |||| | | || | | || || || |||| || || ||||| ||||| || || Sbjct 1963 GCAGACTTTGGTACAA-GGGTCGTTGCTTTCGCAGCAGTAGAGGGCATCTTCTTCTCGGG 1905 Query 44173 ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTC 44232 || ||||| || || || ||| | |||||||||||| ||||||| ||| | || || || Sbjct 1904 TTCCTTTGCCGCAATCTTCTGGCTCAAGAAACGAGGTCTGATGCCAGGGCTTACCTTCTC 1845 Query 44233 AAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 |||||| | || || | || || || | || ||||| ||||| || Sbjct 1844 AAATGAACTCATCAGCAGAGACGAGGGTCTTCACTGCGACTTTGCATG 1797 >seq129531 Length=564 Score = 100 bits (110), Expect = 2e-16 Identities = 249/371 (67%), Gaps = 9/371 (2%) Strand=Plus/Plus Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 ||||| || | |||| ||| | ||||| || ||||| || ||||| || ||||| || Sbjct 1 GAAGTGCAGATTGCAGAGGCAAGGTGTTTCTACGGGTTCCAGATTGCAATTGAAAACATC 60 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGG-GCACGAGAAGCA 44034 || || |||||||| | || || || || |||||||||||| || | ||| | Sbjct 61 CACTCAGAAATGTATTCATTACTCATCGACACATACATCAAAGATCCAGCTC-AGAGAGA 119 Query 44035 TCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCC 44093 | | || ||||| | || || | || |||| | | | |||||| | ||||| Sbjct 120 TTACCTCTTCAATGCCGTTGAGACCATGCCATGCG-TCACCAAGAAAGCACAATGGGCGT 178 Query 44094 TTAAATGGATAAATT----CAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTT 44149 | | ||||| | | || | |||| | | || | | || || || |||| Sbjct 179 TGGACTGGATCAGTAGCGACAGCGCAGACTTTGGCACAAGGG-TCGTTGCTTTCGCAGCA 237 Query 44150 GTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGT 44209 || || ||||| ||||| || || || ||||| || || || ||| | |||||||||||| Sbjct 238 GTAGAGGGCATCTTCTTCTCGGGTTCCTTTGCTGCGATCTTCTGGCTCAAGAAACGAGGT 297 Query 44210 TTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGC 44269 ||||||| ||| | || || |||||||| | || || | || || || | || ||| Sbjct 298 CTGATGCCAGGGCTTACCTTCTCAAATGAACTCATCAGCAGAGACGAGGGTCTTCACTGC 357 Query 44270 GATTTTGCTTG 44280 || ||||| || Sbjct 358 GACTTTGCCTG 368 >seq36655 Length=16638 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 ||||| ||||| || ||||| || || ||||||||||| || ||||||| ||||| ||| Sbjct 1338 AACCCCTTTGACTTCATGGAGAACATCTCGTTGGAAGGAAAGTCAAACTTCTTTGAGAAA 1279 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATGA 44588 || || |||||||| ||| ||| |||||||| Sbjct 1278 CGAGTCGGAGAATACCAGAAGATGAACGTCATGA 1245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395892387477970