Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq295142 96.9 4e-15 seq305029 93.3 5e-14 seq129531 87.8 2e-12 >seq295142 Length=2525 Score = 96.9 bits (106), Expect = 4e-15 Identities = 277/422 (66%), Gaps = 12/422 (3%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || |||||| ||||||||||||||| ||||| || || || ||||||||||| Sbjct 1512 TATTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCTTCCAGCGAGATGTTTTCCATG 1571 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490 ||||| ||||| |||| | ||||| || | ||| | || | | Sbjct 1572 AAGTCGAATGGGTTCTCGACATTCCAGATCTTTTTACAGTCAAGCTCAACAAGCAACCTG 1631 Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCT---CAGAGTTCATACCGATGAGGTTA 122547 || | ||| |||| ||||| || | || | | | |||||||||||||| Sbjct 1632 TCGGCTACAAACTCGATGTA---GGTCTTCATGAGGCCGGCATTCATACCGATGAGAGAG 1688 Query 122548 CATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCG 122607 || || || |||||| | |||| | | || |||| |||||| || | | ||| | Sbjct 1689 CAGGGTAGAGCGTCCGTCAGGAACTCCTGTTCGATCTTAACCGCTTCCCTGATGATCCCC 1748 Query 122608 TGGATA---GTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 122664 |||| | | ||| | ||| | | || | | |||||| | | ||||| Sbjct 1749 TGGACATGAGCTTCCGA--TGGCT-TGTTGTTGAGATGCTTGAACATCAGACATGCAAAG 1805 Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724 || ||| |||||||| |||| | || ||||||||||||||| || |||||||| Sbjct 1806 TCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCTGGCATC 1865 Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 ||||| || ||||| | ||| | || ||| || || || ||||||||||| ||||| Sbjct 1866 AGACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAAGGAACCCGAGAAGAAGATGCCCTCT 1925 Query 122785 AC 122786 || Sbjct 1926 AC 1927 >seq305029 Length=127772 Score = 93.3 bits (102), Expect = 5e-14 Identities = 132/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 |||||| || | ||||| || || | | |||| || ||||| | ||| || |||||||| Sbjct 99012 GTAGATATTACTGGTGTACGGCTCGATGGATTCGTTGTTACCAAGGATCTGAGCGGTGGA 98953 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || |||||||| || || | | |||||||||||| | || | || |||| | Sbjct 98952 TGCAGTTGGCATGGGAGCGAGGAGAAGACTGTTACGGACGCCGTGCTTGGCGATGTCGGC 98893 Query 110827 CTTGAGAACATCCCAGTCGT--AGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 |||||| || ||||||||| || | || |||| ||| | |||||||||||| |||| Sbjct 98892 CTTGAGGGCAGCCCAGTCGTGGAGGTCAG-TTGGGGTCA-CGTCCCACATGTCATGCTGA 98835 Query 110885 AG 110886 || Sbjct 98834 AG 98833 >seq129531 Length=564 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| |||||||| |||| | || ||||||||||||||| || || Sbjct 366 GGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCC 307 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGA 122776 |||||| ||||| || ||||| | ||| | || || ||| || || || |||||||||| Sbjct 306 TGGCATCAGACCTCGTTTCTTGAGCCAGAAGATCGCAGCA-AAGGAACCCGAGAAGAAGA 248 Query 122777 TACCCTCCAC 122786 | ||||| || Sbjct 247 TGCCCTCTAC 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 625497937982400