Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq295142 138 1e-27 seq129531 118 1e-21 seq256343 102 1e-16 seq158717 93.3 5e-14 >seq295142 Length=2525 Score = 138 bits (152), Expect = 1e-27 Identities = 381/578 (66%), Gaps = 12/578 (2%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| ||||||||||| | | |||||||||||| |||||| || ||| Sbjct 1800 GCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCT 1859 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| ||||| || ||||| | |||||| || || ||| || || ||||||||||| Sbjct 1860 GGCATCAGACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAAGGAACCCGAGAAGAAGATG 1919 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTT--GTATCAA 130193 ||||| || ||||| |||| || | | ||||| | | || | || | Sbjct 1920 CCCTCTACTGCTGCGAAAGCAACGACCCTTGTACCAAAG--TCTGCGCTGTCGCTACTGA 1977 Query 130194 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAA 130253 ||| | || |||||| ||||| || || || |||||| | ||||| | || | | Sbjct 1978 TCCAGTCCAGCGCCCATTGCGCTTTCTTGGTGACACACGGCATGGTCTCAACGGCATTGA 2037 Query 130254 AGAGTTCCTTCTTTTCTGA--TGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 130311 |||| | | | ||||| || |||||||||||| | || |||||| |||||| | Sbjct 2038 AGAGGTAAT--CTCTCTGAGCTGAATCTTTGATGTATGTGTCGATGAGTAATGAATACAT 2095 Query 130312 TTCGCCATGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTT 130369 ||| |||| ||||| || ||| ||| || |||||||| | | ||| || Sbjct 2096 TTCTGAGTGGATGTTTTCA--ATTGCAATCTGGAACCCGTAGAAACACCTCGCCTCTGCA 2153 Query 130370 ATCTGTACCTCATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCA 130429 ||||| || || | ||| | | | | |||||| ||||| |||||| || Sbjct 2154 ATCTGCACTTCTTGGCTAAACCTTTCAACCAAGTTCTCATTGACAATACCATCGCTTGCA 2213 Query 130430 GCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAG 130489 || || || || || | || | ||||| | | ||||| || | || | ||| Sbjct 2214 GCGAAGAAAGCAAGAACATGCGAGATGAAGTGCCTCTCATTGTCTGTGAGCTTGGCCCAA 2273 Query 130490 TCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTC 130549 | ||| | || || || ||||| |||||||| || ||||| | | |||||| Sbjct 2274 TGGTCCAAGTCTTTGGAAAGATCGACCTCCTCGGCCGTCCAGAAGGATGCCTCCGCCTTC 2333 Query 130550 TTATAGAGTTCCCAGAGGTGGGGATACTTCAGGGGGAA 130587 || |||| || ||||| || |||| | | |||||| Sbjct 2334 TTGTAGAATTGCCAGATGTCATGATATTGGATGGGGAA 2371 >seq129531 Length=564 Score = 118 bits (130), Expect = 1e-21 Identities = 237/345 (69%), Gaps = 10/345 (3%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| ||||||||||| | | |||||||||||| |||||| || || Sbjct 366 GGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCC 307 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||| ||||| || ||||| | |||||| |||||| ||| || || ||||||||||| Sbjct 306 TGGCATCAGACCTCGTTTCTTGAGCCAGAAGATCGCAGCAAAGGAACCCGAGAAGAAGAT 247 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTG-TATCAA 130193 ||||| || ||||| |||| || | | || || | | | | | || | Sbjct 246 GCCCTCTACTGCTGCGAAAGCAACGA-CCCTTGTGCCAAAGTCTGCGCTGTCGCTACTGA 188 Query 130194 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAA 130253 ||| | || |||||| || || || || || || || | ||||| | || | | Sbjct 187 TCCAGTCCAACGCCCATTGTGCTTTCTTGGTGACGCATGGCATGGTCTCAACGGCATTGA 128 Query 130254 AGAGTTCCTTCTTTTCTGA--TGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 130311 |||| | | | ||||| ||||||||||||||| | || |||||| |||||| | Sbjct 127 AGAGGTAAT--CTCTCTGAGCTGGATCTTTGATGTATGTGTCGATGAGTAATGAATACAT 70 Query 130312 TTCGCCATGGACCATTTCATTATGGCA--CTGATACGCGTAGAAA 130354 ||| |||| ||||| || ||| ||| || |||||||| Sbjct 69 TTCTGAGTGGATGTTTTCA--ATTGCAATCTGGAACCCGTAGAAA 27 >seq256343 Length=109058 Score = 102 bits (112), Expect = 1e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||||||||| |||||| || |||||||| ||||| || |||| Sbjct 31440 CCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCT 31381 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 | | |||||| |||||| ||| || || ||||||||||| ||||| || ||||| | Sbjct 31380 TGAGCCAGAAGATCGCAGCAAAGGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAG 31321 Query 130155 CAAAGA 130160 ||| || Sbjct 31320 CAACGA 31315 >seq158717 Length=98905 Score = 93.3 bits (102), Expect = 5e-14 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 179955 CTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAAC 180014 ||| || | |||||||||||||||||||||||| | ||| |||||| |||||| ||| Sbjct 67131 CTTACCCCTGAGAGGGAACACACCGTAGTGATCTCTACCGACCACACCAAGACCACTAAC 67072 Query 180015 TGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGA-TTGTG 180073 || || ||||| || ||||| ||||| || | ||| | |||||||| ||| || | Sbjct 67071 AGCCAGAGTCTTGGCTGAATCTCCCTCGGTGAGGATCAAGGTACACTTAGAAGAGTTCTT 67012 Query 180074 CCGTCCCTGCCTTGTTCGCGTCGTCCAACTTGGGAATACC 180113 | | ||||| | || || || |||| ||| || || || Sbjct 67011 TCCT-CCTGCATCATTGGCATCATCCAGCTTTGGGATGCC 66973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615939860350640