Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq295142 98.7 1e-15 seq129531 91.5 2e-13 seq305029 87.8 2e-12 seq157606 86.0 7e-12 seq256343 84.2 3e-11 >seq295142 Length=2525 Score = 98.7 bits (108), Expect = 1e-15 Identities = 281/424 (66%), Gaps = 16/424 (4%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||||| |||||||| ||| || | ||||||||||| |||||| Sbjct 1927 GTAGAGGGCATCTTCTTCTCGGGTTCCTTTGCCGCAATCTTCTGGCTCAAGAAACGAGGT 1868 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAA 94947 || |||||||| || |||||| || || || ||| | |||||||| || ||| Sbjct 1867 CTGATGCCAGGGCTTACCTTCTCAAATGAACTCATCAGCAGAGACGAGGGTCTTCACTGC 1808 Query 94948 GAGTTTGC-GGTGGAACTTTTCAAATTATTGCGTATTAAACCAACGACTGAGACTATTCA 95006 || ||||| || | | ||||| | | || ||| || | | | || Sbjct 1807 GACTTTGCATGTCTGA-TGTTCAAGCATCTCAACAACAAGCCATCGGAAGCTCATGTCCA 1749 Query 95007 TTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGA-TTCATATTGGATGCCCTTCCAT 95065 || | | |||||| ||| |||| || | |||| ||| | ||| || || || | Sbjct 1748 GGGGATCATCAGGGAAGCGGTTAAGATCGA-ACAGGAGTTCCTGACGGACGCTCTACCCT 1690 Query 95066 GCGCTCTCATCGGTATGAATTCTGAAAAAATGTCTGAATATATTGAGTATGTATCTGATA 95125 || ||||||||||||||||| | | ||| || || |||| |||| | || | Sbjct 1689 GCTCTCTCATCGGTATGAATGCCGGCCTCATGAAGACCTACATCGAGTTTGTAGCCGACA 1630 Query 95126 GATTG-TTGAAGCAGATCGGGGTGCCTCCA-----ATTTGGAACTCCAAGAATCCATTTG 95179 | ||| ||| | || | || || | || ||||| | |||| ||||| | Sbjct 1629 GGTTGCTTGTTG-AGCT-----TGACTGTAAAAAGATCTGGAATGTCGAGAACCCATTCG 1576 Query 95180 ACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAAAGAGGGTTGGGG 95239 |||||||||| ||||| || || || ||||| |||||||| || |||| ||| || | Sbjct 1575 ACTTCATGGAAAACATCTCGCTGGAAGGAAAGACGAACTTCTTTGAGAAGAAGGTCGGTG 1516 Query 95240 ACTA 95243 | || Sbjct 1515 AATA 1512 >seq129531 Length=564 Score = 91.5 bits (100), Expect = 2e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGG 94886 || ||||| ||||||||||| |||||||| ||| || || | ||||||||||| ||||| Sbjct 238 GTAGAGGGCATCTTCTTCTCGGGTTCCTT-TGCTGCGATCTTCTGGCTCAAGAAACGAGG 296 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCA 94946 ||| |||||||| || |||||| || || || ||| | |||||||| || ||| Sbjct 297 TCTGATGCCAGGGCTTACCTTCTCAAATGAACTCATCAGCAGAGACGAGGGTCTTCACTG 356 Query 94947 AGAGTTTGC 94955 || ||||| Sbjct 357 CGACTTTGC 365 >seq305029 Length=127772 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 105419 CTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACT--ACGACTGGGAAGCTCTCA 105476 ||||| ||| |||||||| | ||| |||| || || ||||||||| || |||| Sbjct 98833 CTTCAGCATGACATGTGGGACG-TGACCCCAA-CTGACCTCCACGACTGGGCTGCCCTCA 98890 Query 105477 AGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAG 105536 ||| |||| || | || | ||||||||||| ||| | ||||| |||||||| | Sbjct 98891 AGGCCGACATCGCCAAGCACGGCGTCCGTAACAGTCTTCTCCTCGCTCCCATGCCAACTG 98950 Query 105537 CCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCT 105596 | |||||||| || ||| | ||||| || |||| | | || || ||||| | || |||| Sbjct 98951 CATCCACCGCTCAGATCCTTGGTAACAACGAATCCATCGAGCCGTACACCAGTAATATCT 99010 Query 105597 A 105597 | Sbjct 99011 A 99011 >seq157606 Length=123967 Score = 86.0 bits (94), Expect = 7e-12 Identities = 177/261 (68%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 168455 GCATCCTTACCACCCATGA-GACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGAT 168513 || ||||| || || |||| |||| ||||||||||||||| |||| || ||||| | Sbjct 122918 GCGTCCTTTCCTCC-ATGAAGACGGGTACCAAACTGACCAATGGGCTGCAGGAGATTCAG 122976 Query 168514 ATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTC 168573 ||||| ||| | ||| | ||||| |||| ||| ||| | ||||| || Sbjct 122977 GTTGTTGCTACCAACAAAGTTCTGCGCCAGGTTGATAATGGTGCTCATCAGAGATGTCTC 123036 Query 168574 ACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTC 168633 ||| || || || || ||| || ||| | |||| ||| |||||||| ||||| Sbjct 123037 ACCATGATGATAAGCTGAAAGCTCAGCCACAGCACCAGCCATCTGGGCCACTTTGATCTC 123096 Query 168634 ATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACC 168693 | ||| || ||| | |||||||| |||| ||||| || || ||||| | ||| Sbjct 123097 TTTCTTCTCATACTTCTTGAAGCATGTATACAGTACCTTACGCTGACCTGGCTTCAAACC 123156 Query 168694 ATCCGCCATGTGTGCGATAGA 168714 ||| ||||| || ||| || Sbjct 123157 ATCAACCATGGATGGGATTGA 123177 >seq256343 Length=109058 Score = 84.2 bits (92), Expect = 3e-11 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGG 94886 || ||||| ||||||||||| |||||||| ||| || || | ||||||||||| ||||| Sbjct 31332 GTAGAGGGCATCTTCTTCTCGGGTTCCTT-TGCTGCGATCTTCTGGCTCAAGAAACGAGG 31390 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 ||| |||||||| || |||||| || || || ||| | ||||||| Sbjct 31391 TCTGATGCCAGGGCTTACCTTCTCAAATGAACTCATCAGCAGAGACGAGG 31440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580907386416560