Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_028103.1 Length=32939 Score E Sequences producing significant alignments: (Bits) Value seq201746 80.6 6e-11 >seq201746 Length=230 Score = 80.6 bits (88), Expect = 6e-11 Identities = 143/200 (72%), Gaps = 9/200 (5%) Strand=Plus/Minus Query 6096 TGGTCAGAAAAAACAGtttttttATTGTCCAGTTTGGTAGCGAAGGAGCCGTATAGGGCG 6155 |||||||||| | || | |||| |||| || ||| || || || ||||| |||||| Sbjct 204 TGGTCAGAAAGA-CAATCTTTTG--TGTCAGCTTGGGTGGCAAACGACCCGTAGAGGGCG 148 Query 6156 TTGGAAAGCAGTTTTGCAAT-GGATCTCAGCG--TTTGATTTTTGTCTTTGTCGGCTTTT 6212 ||||| |||| || || || ||| | ||| | |||| |||||| | ||||| Sbjct 147 TTGGACAGCAACTTGGCGATGGGAGCGCAGGGGTTTTGGTTTTTG-CGCGATCGGCGCGC 89 Query 6213 TCTTTGGCGGCGATGTTGAGCTGCACATATTCCCTGGCTACGCATTTCCACTGAGGAAAA 6272 || ||||| |||||||| |||||||| ||||| | || ||||| ||| | || ||| Sbjct 88 TCCTTGGCCGCGATGTTTAGCTGCACGTATTCGCGCGCAACGCACCGCCA-TTCGGGAAA 30 Query 6273 ACGGTAGTGCGTTCATCTGG 6292 |||| ||||| || || || Sbjct 29 GCGGT-GTGCGCTCGTCGGG 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104879630675028