Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_028105.1 Length=35159 Score E Sequences producing significant alignments: (Bits) Value seq201746 188 2e-43 >seq201746 Length=230 Score = 188 bits (208), Expect = 2e-43 Identities = 193/238 (81%), Gaps = 12/238 (5%) Strand=Plus/Minus Query 5990 ATGCTTTTGAGGAGGGCGGGGTCCATCTGGTCGGCAAAAACGATTTTCTTGTTGTCGAGC 6049 |||| ||||||| | || | ||||||||||| | ||| || || || |||| ||| ||| Sbjct 230 ATGCCTTTGAGG-GTGCCGCATCCATCTGGTCAG-AAAGACAATCTT-TTGT-GTC-AGC 176 Query 6050 TTGG-TGGCGAACGACCCGTAGAGGGCGTTGGAGAGCAGTTTGGCGAT-GGAGCGCAGGG 6107 |||| |||| ||||||||||||||||||||||| |||| |||||||| ||||||||||| Sbjct 175 TTGGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGGAGCGCAGGG 116 Query 6108 --TCTGGTTCTTGTCGCGGTCGGCCTTTTCCTTGGCGGCGATGTTGAGCTGCACGTACTC 6165 | ||||| ||| |||| ||||| |||||||| |||||||| ||||||||||| || Sbjct 115 GTTTTGGTTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTC 57 Query 6166 GCGCGCCAGACAGCGCCAGGCTGGAAAGACGGTTGTGCGTTCGTCGGGCAGCAGGCGC 6223 |||||| | || ||||| | |||||| ||| |||||| |||||||||| |||| || Sbjct 56 GCGCGCAACGCACCGCCATTCGGGAAAG-CGG-TGTGCGCTCGTCGGGCACCAGGTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111956399773188