Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_028107.1 Length=34064 Score E Sequences producing significant alignments: (Bits) Value seq201746 179 8e-41 >seq201746 Length=230 Score = 179 bits (198), Expect = 8e-41 Identities = 169/208 (81%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 5714 TCCATTTGGTCAGAAAAAACAATCTTTTTATTGTCAAGTTTCGTGGCAAACGACCCGTAG 5773 ||||| |||||||||| | ||||||||| ||||| || |||||||||||||||||| Sbjct 210 TCCATCTGGTCAGAAAGA-CAATCTTTTG--TGTCAGCTTGGGTGGCAAACGACCCGTAG 154 Query 5774 AGGGCGTTAGATAGCAATTTGGCAATGGAA-CGTAAAG-TTTGAtttttttCGCGGTCGG 5831 |||||||| || ||||| ||||| |||| | || | | ||| ||||| |||| |||| Sbjct 153 AGGGCGTTGGACAGCAACTTGGCGATGGGAGCGCAGGGGTTTTGGTTTTTGCGCGATCGG 94 Query 5832 CCCGCTCCTTGGCCGCGATGTTAAGTTGTACGTACTCCCGGGCCACGCAGCGCCACTCCG 5891 | |||||||||||||||||||| || || ||||| || || || ||||| ||||| | || Sbjct 93 CGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCGCGCGCAACGCACCGCCA-TTCG 35 Query 5892 GGAAAACAGTAGTGCGCTCGTCGGGCAC 5919 ||||| | || ||||||||||||||||| Sbjct 34 GGAAAGCGGT-GTGCGCTCGTCGGGCAC 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108465831231528