Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq305029 91.5 2e-13 >seq305029 Length=127772 Score = 91.5 bits (100), Expect = 2e-13 Identities = 177/259 (68%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 19424 CCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGC 19483 |||||||| || || | |||||| || || || || || | ||||| ||| || || Sbjct 93592 CCAATGCTTCGTGTGTACAACAATACAGCTAGATATGTAGATCAGGGAGGCAATAAGCGT 93651 Query 19484 AAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAA 19543 || | || ||||||||||| ||||||||||| || || || |||||| | || Sbjct 93652 CCTGGTGCCTTTGCCATCTACCTAGAGCCATGGCATGCTGATATCCATGATTTCTTAGA- 93710 Query 19544 CTGCGCCT-GAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTG 19602 ||| |||||| || | ||||| | | || || || ||| ||| | || Sbjct 93711 CTGTAAGAAGAACCACGGCAAGGAGGAACAGAGAGCCCGAGATCTGTTCTATGCCCTCTG 93770 Query 19603 GATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCC 19662 ||| || || || || ||| ||| |||||| || | || ||| ||| |||||||| Sbjct 93771 GATCCCTGATCTCTTTATGAAGAGGGTTGAAGCTGATGGTGACTGGACCCTCATGTGCCC 93830 Query 19663 GCACGAATGCCCTGGCCTA 19681 || ||||||||||||||| Sbjct 93831 TCATGAATGCCCTGGCCTA 93849 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 20342 GCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATG 20401 |||||||||| || ||| | ||||| | || ||| | ||| |||| |||||| Sbjct 98884 GCCCTCAAGGCCGACATCGCCAAGCACGGCGTCCGTAACAGTCTTCTCCTCGCTCCCATG 98943 Query 20402 CCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACC 20461 || || || || ||||| |||||| | || |||||||| | ||||||||||||| | Sbjct 98944 CCAACTGCATCCACCGCTCAGATCCTTGGTAACAACGAATCCATCGAGCCGTACACCAGT 99003 Query 20462 AACATCTACTTGCGTCGT 20479 || |||||| ||||||| Sbjct 99004 AATATCTACACGCGTCGT 99021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546311543571360