Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq157606 165 9e-36 seq295142 100 3e-16 seq99992 91.5 2e-13 >seq157606 Length=123967 Score = 165 bits (182), Expect = 9e-36 Identities = 208/286 (73%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 117303 GAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATT 117362 |||||||||| ||||||| || ||||| ||||| || ||| |||||| ||||| || | Sbjct 122892 GAGTGAAAATATAACGAGGACTAGCAGCGTCCTTTCCTCCATGAAGACGGGTACCAAACT 122951 Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 | ||| | |||| || ||| |||||||||||| || |||||||| || |||| ||||| Sbjct 122952 GACCAATGGGCTGCAGGAGATTCAGGTTGTTGCTACCAACAAAGTTCTGCGCCAGGTTGA 123011 Query 117423 CAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482 ||| || | || | ||||||||| ||||| || | |||| ||||| | Sbjct 123012 TAATGGTGCTCATCAGAGATGTCTCACCATGATGATAAGCTGAAAGCTCAGCCACAGCAC 123071 Query 117483 CCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCA 117542 | |||| ||| ||||| || || ||| | || | |||||||| ||| | ||| | | Sbjct 123072 CAGCCATCTGGGCCACTTTGATCTCTTTCTTCTCATACTTCTTGAAGCATGTATACAGTA 123131 Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGA 117588 |||| ||||||| |||||||| |||||| ||| | ||||| || Sbjct 123132 CCTTACGCTGACCTGGCTTCAAACCATCAACCATGGATGGGATTGA 123177 Score = 113 bits (124), Expect = 5e-20 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 117303 GAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATT 117362 |||||||||| ||||||| ||| ||||| ||||| || ||| |||||| ||||| || | Sbjct 119413 GAGTGAAAATATAACGAGGGCTAGCAGCGTCCTTTCCTCCATGAAGACGGGTACCAAACT 119472 Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 | ||| | |||| || ||| |||||||||||| || |||||||| || |||| ||||| Sbjct 119473 GACCAATGGGCTGCAGGAGATTCAGGTTGTTGCTACCAACAAAGTTCTGCGCCAGGTTGA 119532 Query 117423 CAATCGT 117429 ||| || Sbjct 119533 TAATGGT 119539 >seq295142 Length=2525 Score = 100 bits (110), Expect = 3e-16 Identities = 363/559 (65%), Gaps = 13/559 (2%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || || |||||||| || | |||||| || || | ||| || ||||| || || || ||| Sbjct 1818 CCCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTC 1877 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| ||||| || |||||||| |||||||||||| || || || || Sbjct 1878 TTGAGCCAGAAGATTGCGGCAAAGGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAA 1937 Query 74889 GCGACAAGGCGTTGCGCGAACGG-TGCA---TCGGAAGTCATCCAAGTCTGAGCCCATTC 74944 || || | | ||| | || | ||| ||| | | ||||| | | ||||||| Sbjct 1938 GCAACGACCC-TTGTACCAAAGTCTGCGCTGTCGCTACTGATCCAGTCCAGCGCCCATTG 1996 Query 74945 AGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTC 75004 ||||| |||| || | || || | || | ||||||| | ||| | Sbjct 1997 CGCTTTCTTGGTGACACACGGCATGGTCTCAACGGCATTGAAGAGGTAATCTCTCTGAGC 2056 Query 75005 GGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCG-T 75063 | ||| |||| | |||| || | | ||| ||| | || || || || || | Sbjct 2057 TGAATCTTTGATGTATGTGTCGATGAGTAATGAATACATTTCTGAGTGGATGTTTTCAAT 2116 Query 75064 TGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAA- 75122 || | |||| || |||||||| ||| ||||||||||||||| || | ||| | ||| Sbjct 2117 TGCAAT-CTGGAACCCGTAGAAACACCTCGCCTCTGCAATCTGCAC-TTCTTGGCTAAAC 2174 Query 75123 --TTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCA 75180 |||| | | ||||| |||| || || || || ||||| ||||| || || Sbjct 2175 CTTTCA--ACCAAGTTCTCATTGACAATACCATCGCTTGCAGCGAAGAAAGCAAGAACAT 2232 Query 75181 TTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCA 75240 ||| ||||| | ||||| ||| ||||| ||| |||||| | || ||| | | Sbjct 2233 GCGAGATGAAGTGCCTCTCATTGTCTGTGAGCTTGGCCCAATGGTCCAAGTCTTTGGAAA 2292 Query 75241 AATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGT 75300 ||| | ||||||| |||||||||| | |||||| ||||| || ||| | || Sbjct 2293 GATCGACCTCCTCGGCCGTCCAGAAGGATGCCTCCGCCTTCTTGTAGAATTGCCAGATGT 2352 Query 75301 CAGGGTAATTGATTGGAAA 75319 || | || | ||| || || Sbjct 2353 CATGATATTGGATGGGGAA 2371 >seq99992 Length=792 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 124712 CTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTT 124771 ||| |||||||| || || ||| | || |||||||| || | || | | ||||| | Sbjct 527 CTCATGGTTGAATAGGATACCATTGCAAGCAAACATGTTATAGGCTTCTCTGAAGTTTAT 586 Query 124772 CGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831 ||| ||||| ||| || | ||||||| | ||||| ||| ||||| ||||| || || Sbjct 587 CGTGATCCAGTACGCATACAGCTTGGCTGCACCATAAGGGGAACGGGGATAGAAGGGCGT 646 Query 124832 GTTTTCATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATA 124891 | | || ||||||| | |||| ||| ||||||||||| ||| |||||| || Sbjct 647 GGTCTCCTTTTGGGGTATCTCTTGAACCTTGCCAAACATCTCACTGGTAGACGCCTGGTA 706 Query 124892 GAA 124894 ||| Sbjct 707 GAA 709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545008024481200