Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_028113.1 Length=35685 Score E Sequences producing significant alignments: (Bits) Value seq201746 199 9e-47 >seq201746 Length=230 Score = 199 bits (220), Expect = 9e-47 Identities = 192/234 (82%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 6007 ATGCCTTTGAGAAGGGCGGGGTCGAGCTGGTCGGCAAAAACAAtttttttATTGTCCAGC 6066 ||||||||||| | || | || | |||||| | ||| ||||| |||| |||| ||| Sbjct 230 ATGCCTTTGAGG-GTGCCGCATCCATCTGGTCAG-AAAGACAATCTTTTG--TGTC-AGC 176 Query 6067 TTAG-TGGCAAAGGACCCGTAGAGGGCGTTGGAGAGCAGCTTGGCGATGGAA-CGCAGGG 6124 || | ||||||| |||||||||||||||||||| |||| ||||||||||| | ||||||| Sbjct 175 TTGGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGGAGCGCAGGG 116 Query 6125 --TCTGGTTTTTGTCGCGGTCGGCGCGCTCCTTGGCGGCAATGTTGAGCTGCACGTACTC 6182 | ||||||||| |||| ||||||||||||||||| || ||||| ||||||||||| || Sbjct 115 GTTTTGGTTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTC 57 Query 6183 GCGCGCCAGGCAGCGCCACTGCGGAAAGACGGTGGTGCGCTCGTCGGGGAGCAG 6236 |||||| | ||| ||||| | |||||| |||| |||||||||||||| | ||| Sbjct 56 GCGCGCAACGCACCGCCATTCGGGAAAG-CGGT-GTGCGCTCGTCGGGCACCAG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113633147766716