Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq104363 98.7 4e-16 >seq104363 Length=468 Score = 98.7 bits (108), Expect = 4e-16 Identities = 144/199 (72%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 2842 ACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTTTCCATAGAC--GATGAGACCCG 2899 ||| ||||||||||||||| || |||||||| || | ||| || | | | | | Sbjct 121 ACAGCGCCTGCTCCAGCGCGTCGAGCACGAACTCGGTGTGCATCGAACTGCTCTGGC--G 178 Query 2900 CCACCCCACGATGTATCCGGCA-AACACATCAATGATAAACGCCACATAGACGAAGCCCT 2958 ||| ||||||||| ||||| ||||| || | | || ||||||||||| |||||| Sbjct 179 CCAGCCCACGATGCG-CCGGCTGAACACGTCCACCACGAATGCCACATAGACCCAGCCCT 237 Query 2959 GCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGA 3018 |||| || |||||| || || || | ||||||||||||| || || || || || Sbjct 238 GCCAGGTCGAGACGTACGTGAAGTCCGAGACCCACAGCTGGTTGGGCCGCTCGGCACGGA 297 Query 3019 ACTGACGGTTTACGCGGTC 3037 |||| ||||| || ||||| Sbjct 298 ACTGCCGGTTGACCCGGTC 316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 202496222990020