Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq80839 131 1e-25 seq233793 118 9e-22 seq172955 118 9e-22 seq177272 116 3e-21 seq305346 113 4e-20 seq171612 111 1e-19 seq15040 105 6e-18 seq124407 102 7e-17 seq283656 95.1 1e-14 seq26610 89.7 4e-13 seq33451 87.8 2e-12 >seq80839 Length=604 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || || ||||| |||||| |||| || ||||| ||||| || || Sbjct 4 ATGCAGATATTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGCCTTCT 63 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || || || |||||||| || || || || || Sbjct 64 GACACCATAGAGAATGTCAAGGCTAAGATCCAGGATAAAGAAGGTATTCCTCCTGACCAG 123 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| ||||| || | ||||| | ||| | || || |||||| Sbjct 124 CAGCGTTTGATCTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTATCAGACTACAAC 183 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||| || ||| | ||| | ||| | ||| | || ||||| Sbjct 184 ATCCAGAAGGAATCAACCCTCCATCTTGTTCTTCGTCTACGTGGTGG 230 >seq233793 Length=42987 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || |||||||| || || || Sbjct 13017 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT 12958 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || ||| ||||| ||||| |||||||| || |||||||| Sbjct 12957 GACACCATCGAGAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATTCCCCCCGATCAG 12898 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| ||| | || ||| | || | || || |||||| Sbjct 12897 CAGCGTCTCATCTTCGCTGGCAAGCAACTCGAGGACGGCCGCACTCTATCAGACTACAAC 12838 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || ||||||||||| || | ||| | ||| Sbjct 12837 ATCCAAAAGGAGTCAACTCTCCATCTCGTT 12808 Score = 114 bits (126), Expect = 1e-20 Identities = 152/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || |||||||| || || || Sbjct 13244 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT 13185 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || | |||| | |||||||||| |||||||| || || ||||| Sbjct 13184 GACACCATCGAGAATGTAAGGCAAAGA-TTCAAGACAAGGAAGGCATTCCCCCTGATCAG 13126 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| ||| ||||||| | || | || || |||||| Sbjct 13125 CAGCGTCTCATCTTCGCTGGCAAGCAACTGGAAGATGGCCGCACTCTGTCAGACTACAAC 13066 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || || |||||||| || | ||| | ||| Sbjct 13065 ATCCAGAAGGAGTCAACTCTCCATCTTGTT 13036 >seq172955 Length=397 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || |||||||| || || || | Sbjct 95 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGCCAAGC 154 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || ||| ||||| ||||| |||||||| || |||||||| Sbjct 155 GACACCATCGAGAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATTCCCCCCGATCAG 214 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| ||| | || || | || | || || |||||| Sbjct 215 CAGCGTCTCATCTTCGCTGGCAAGCAACTCGAGGATGGCCGCACTCTATCAGACTACAAC 274 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || ||||||||||| || | ||| | ||| Sbjct 275 ATCCAAAAGGAGTCAACTCTCCATCTTGTT 304 >seq177272 Length=310 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || ||||| || || || || Sbjct 238 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTTGAGCCAAGT 179 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || ||| ||||||||||| |||||||| || || ||||| Sbjct 178 GACACCATCGAGAATGTAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCCCCTGATCAG 119 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| ||| |||||||| | || | || || |||||| Sbjct 118 CAGCGTCTCATCTTCGCTGGCAAGCAACTGGAAGACGGCCGCACTCTATCAGACTACAAC 59 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 58 ATCCAGAAGGAGTCAAC 42 >seq305346 Length=360 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || |||||||| || || || Sbjct 318 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT 259 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || ||| ||||| ||||| |||||||| || || ||||| Sbjct 258 GACACCATCGAGAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATCCCCCCTGATCAG 199 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| ||| | |||||| | || | || || |||||| Sbjct 198 CAGCGTCTCATCTTTGCTGGCAAGCAACTCGAAGACGGCCGCACTCTATCAGACTACAAC 139 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || ||||||||||| || | ||| | ||| Sbjct 138 ATCCAAAAGGAGTCAACTCTCCATCTTGTT 109 >seq171612 Length=420 Score = 111 bits (122), Expect = 1e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || |||||||| || || || | Sbjct 259 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACTCTTGAGGTTGAGCCAAGC 318 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||| ||||| |||||||||||||| || || ||||| Sbjct 319 GACACCATCGAGAATGTCAAAGCAAAGATTCAGGACAAAGAAGGCATTCCCCCTGATCAG 378 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGT 27146 |||||| | || | ||| ||||| ||| | || ||| || Sbjct 379 CAGCGTCTCATCTTCGCTGGCAAGCAACTCGAGGACGGT 417 >seq15040 Length=705 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || |||||||| || || || Sbjct 550 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT 609 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||| ||||| |||||||||||||| || || ||||| Sbjct 610 GACACCATCGAGAATGTCAAAGCAAAGATTCAGGACAAAGAAGGCATTCCCCCTGATCAG 669 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 |||||| | || | ||| ||||| ||| | || ||| Sbjct 670 CAGCGTCTCATCTTCGCTGGCAAGCAACTCGAGGAC 705 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/213 (71%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || |||||||| || || || Sbjct 93 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGAC-ATCACTCTTGAGGTTGAGCCAAGT 151 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACC-CGATCA 27106 ||| | || |||| || | |||| | |||| ||||| |||||||| || || |||||| Sbjct 152 GACACCATCGAGAACGTAAGGCAAAGA-TTCAGGACAAGGAAGGCATCCCCCCTCGATCA 210 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTAC- 27164 |||||| | || | ||| ||||| ||| | || ||| | || | || || ||| Sbjct 211 GCAGCGTCTCATCTTCGCTGGCAAGCAACTCGAGGACGGCCGCACTCTAATCAGACTACG 270 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||||| || ||||||||||| | ||| | ||| Sbjct 271 AACATCCAGAAGGAGTCGACTCTCCATCTTGTT 303 >seq124407 Length=407 Score = 102 bits (112), Expect = 7e-17 Identities = 135/186 (73%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || |||||| | ||||||||||| || || || ||| | || |||| || || | Sbjct 3 ACTGGCAAGACCATTACTCTTGAGGTTGAGCCAAGTGACACCATCGAGAATGTAAAGGCA 62 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || ||||| ||||| |||||||| || |||||||| |||||| | || | ||| ||||| Sbjct 63 AAGATTCAGGACAAGGAAGGCATTCC-CCCGATCAGCAGCGTCTCATCTTCGCTGGCAAG 121 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 ||| | || ||| | || | || || |||||||| ||||||||||| || | ||| Sbjct 122 CAACTCGAGGACGGCCGCACTCTATCAGACTACAACATCCAAAAGGAGTCAACTCTCCAT 181 Query 27192 TTGGTT 27197 | ||| Sbjct 182 CTCGTT 187 >seq283656 Length=776 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || ||||| |||| || || | || || || || |||||||| || | ||||| Sbjct 775 GTGAAAACATTGACGGGGAAAACCATCACCCTCGAGGTGGAACCCAGTGATACTATTGAA 716 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | || || |||||||||||||| ||||| || || |||||||| ||||| | || Sbjct 715 AATGTAAAGGCCAAAATTCAAGACAAGGAAGGTATCCCTCCCGATCAGCAGCGCCTGATC 656 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | ||||||||| || ||||||| | || | || || ||||| || || |||||| Sbjct 655 TTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTGTCTGACTACAATATCCAGAAGGAG 596 Query 27180 TCGACCTTACATTTGGT 27196 || ||| | || ||||| Sbjct 595 TCCACCCTCCACTTGGT 579 >seq26610 Length=451 Score = 89.7 bits (98), Expect = 4e-13 Identities = 155/218 (71%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || |||||||| || || || | Sbjct 228 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGCCAAGC 169 Query 27048 GACTCGATTGAGATGGT-CAAACAAAAAATTCAAGA-CAAAG-AAGGCA---TACCACCC 27101 ||| | || |||| || |||| ||| ||||| || ||||| ||||| | || || Sbjct 168 GACACCATCGAGAATGTACAAAGCAAAGATTCAGGAACAAAGGAAGGCTACCTTCCCCCT 109 Query 27102 GATCAACAGCGTT-TAATATACGCC-GGCAAACAATTGGAAGACAGTTCGACCGTTTCCG 27159 ||||| |||||| | || | || | ||||| ||| | || ||| | || |||| | Sbjct 108 GATCAGCAGCGTACTCATCTTCGGCTGGCAAGCAACTCGAGGACGGCCGCACTCTTTCAG 49 Query 27160 ATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 | |||||||| || ||||||||||| | ||| | ||| Sbjct 48 ACTACAACATCCAGAAGGAGTCGACTCTCCATCTCGTT 11 >seq33451 Length=524 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/157 (74%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || |||||||| || || || Sbjct 368 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT 427 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATT-CAAGACAAAGAAGG-CATACCACCCGATC 27105 ||| | || |||| |||||| ||| ||| || ||||||||||| ||| || || |||| Sbjct 428 GACACCATCGAGAATGTCAAAGCAAAGATTACAGGACAAAGAAGGACATTCC-CCTGATC 486 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 | |||||| | || | ||| ||||| ||| | || || Sbjct 487 AGCAGCGTCTCATCTTCGCTGGCAAGCAACTTGAGGA 523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433210595864042