Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_029898.1 Length=37545 Score E Sequences producing significant alignments: (Bits) Value seq201746 104 6e-18 >seq201746 Length=230 Score = 104 bits (114), Expect = 6e-18 Identities = 164/221 (74%), Gaps = 12/221 (5%) Strand=Plus/Minus Query 6100 ATGCCTTTGAGGTACTTGTCTTCCATCTGGTCGGCGAAGACGGTGGTCTTGTTGTCCAGC 6159 |||||||||||| | | ||||||||||| | ||||| | | |||| ||| ||| Sbjct 230 ATGCCTTTGAGGGTGCCG-CATCCATCTGGTCAGA-AAGACAATCTT-TTGT-GTC-AGC 176 Query 6160 TTGG-TGGCGAAGGAGCCGTAGAGGGCATTGGAGAGGAGCTTGGCAAT-GCTGCGGATGG 6217 |||| |||| || || ||||||||||| ||||| || | |||||| || | ||| | || Sbjct 175 TTGGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGGAGCGCAGGG 116 Query 6218 --TCTGGTTCTTGTCCCGGTCCGCCTGTTCCTTGGCGCGGATGTTGAGCTGGACATACTC 6275 | ||||| ||| | || || || | |||||||| |||||| ||||| || || || Sbjct 115 GTTTTGGTTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTC 57 Query 6276 GCGGGCCACGCAGCGCCACTCGGGGAACACGGTGGTGCGCT 6316 ||| || ||||| ||||| || ||||| |||| ||||||| Sbjct 56 GCGCGCAACGCACCGCCATTC-GGGAAAGCGGT-GTGCGCT 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119562332686796