Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq177272 127 1e-24 seq15040 122 6e-23 seq233793 118 7e-22 seq171612 98.7 7e-16 >seq177272 Length=310 Score = 127 bits (140), Expect = 1e-24 Identities = 165/227 (73%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||||||||| ||||| | | Sbjct 238 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTTGAGCCAAGT 179 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| ||| ||| ||||| ||||| | || || ||||| Sbjct 178 GACACCATCGAGAATGTAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCCCCTGATCAG 119 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| ||||||||||||| |||||| || || |||||| Sbjct 118 CAGCGTCTCATCTTCGCTGGCAAGCAACTGGAAGACGGCCGCACTCTATCAGACTACAAC 59 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || | ||| | | | | ||| | || ||||| Sbjct 58 ATCCAGAAGGAGTCAACTCTCCATCTTG-TCTCAGGCTCCGTGGAGG 13 >seq15040 Length=705 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||||||||| ||||| | | Sbjct 322 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACTCTCGAGGTTGAGCCAAGT 381 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| ||| ||| ||||| ||||| | || || ||||| Sbjct 382 GACACCATCGAGAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATTCCCCCCGATCAG 441 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| |||| || || || || ||||| || |||| |||||| || || |||||| Sbjct 442 CAGCGTCTAATCTTCGCTGGAAAGCAACTCGAGGACGGCCGCACTCTATCAGACTACAAC 501 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || || | ||| | ||| | ||| | || ||||| Sbjct 502 ATCCAGAAGGAATCTACTCTCCATCTCGTTCTCAGGCTCCGTGGAGG 548 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || |||||||| || ||||| | | Sbjct 550 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT 609 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| |||| | || ||||||||||| | || || ||||| Sbjct 610 GACACCATCGAGAATGTCAAAGCAAAGA-TTCAGGACAAAGAAGGCATTCCCCCTGATCA 668 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGAC 23766 |||||| | || || || ||||| ||||| || ||| Sbjct 669 GCAGCGTCTCATCTTCGCTGGCAAGCAACTCGAGGAC 705 >seq233793 Length=42987 Score = 118 bits (130), Expect = 7e-22 Identities = 163/227 (72%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || |||||||| || ||||| | | Sbjct 13244 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT 13185 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | ||| |||| | || ||||| ||||| | || || ||||| Sbjct 13184 GACACCATCGAGAATGTAAGGCAAAGA-TTCAAGACAAGGAAGGCATTCCCCCTGATCAG 13126 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| ||||||||||| | |||||| | || |||||| Sbjct 13125 CAGCGTCTCATCTTCGCTGGCAAGCAACTGGAAGATGGCCGCACTCTGTCAGACTACAAC 13066 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || | ||| | ||| | ||| | || ||||| Sbjct 13065 ATCCAGAAGGAGTCAACTCTCCATCTTGTTCTCAGGCTCCGTGGAGG 13019 >seq171612 Length=420 Score = 98.7 bits (108), Expect = 7e-16 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || |||||||| || ||||| | | Sbjct 259 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACTCTTGAGGTTGAGCCAAGC 318 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| |||| | || ||||||||||| | || || ||||| Sbjct 319 GACACCATCGAGAATGTCAAAGCAAAGA-TTCAGGACAAAGAAGGCATTCCCCCTGATCA 377 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG 23767 |||||| | || || || ||||| ||||| || |||| Sbjct 378 GCAGCGTCTCATCTTCGCTGGCAAGCAACTCGAGGACG 415 Score = 86.0 bits (94), Expect = 4e-12 Identities = 164/237 (69%), Gaps = 10/237 (4%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||||||||| ||||| | | Sbjct 21 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTTGAGCCAAGT 80 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAG--AAGG--TGTACCGCCAG 23725 ||||| | || ||| | | |||| || | ||| ||| |||| | || || | Sbjct 81 GACACCATCGAGAATGTAAGGACAAGAATTCTAAGACGAAGGAAAGGACGATTCCCCCTG 140 Query 23726 ATCA---ACAGCGTTTAA--TATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGG 23780 |||| | |||| | | | || || ||||| ||||||||||| | |||||| | Sbjct 141 ATCAGCCAAGGCGTCTCAGGTCTTCGCTGGCAAGCAACTGGAAGATGGCCGCACTCTGTC 200 Query 23781 CGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || || ||||| || | ||| | ||| | ||| | || ||||| Sbjct 201 AGACTACAACATCCAGAAGGAGTCAACTCTCCATCTTGTTCTCAGGCTCCGTGGAGG 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336679852699352