Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq302008 111 1e-19 seq197649 111 1e-19 seq320246 89.7 4e-13 >seq302008 Length=60799 Score = 111 bits (122), Expect = 1e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 29647 CAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCC 29706 ||| ||||| | ||| | || || || |||||||||||||| ||||| || || ||||| Sbjct 7023 CAGTGGTTCGATGTGATTCAGATACACATGAGCATCTCCCAGTGTGTGCACGAAATCTCC 7082 Query 29707 CGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTT 29766 |||| || || ||||| || |||||||| |||||||| || |||||||| ||||| Sbjct 7083 TGGTTTGAGGTTAGTCACGTGTGCTATCATGTAGGTGAGGAGGGAATAGCTGGCAATGTT 7142 Query 29767 AAAGGGCACCCCGAGCCCC 29785 |||||||| || || ||| Sbjct 7143 GAAGGGCACTCCAAGACCC 7161 >seq197649 Length=5997 Score = 111 bits (122), Expect = 1e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 29647 CAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCC 29706 ||| ||||| | ||| | || || || |||||||||||||| ||||| ||||| ||||| Sbjct 3113 CAGTGGTTCGATGTGATTCAGATACACATGAGCATCTCCCAGTGTGTGCACAAAGTCTCC 3054 Query 29707 CGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTT 29766 |||| || || || || || |||||||| |||||||| || |||||||| ||||| Sbjct 3053 TGGTTTGAGGTTAGTCACATGTGCTATCATGTAGGTGAGGAGGGAATAGCTGGCAATGTT 2994 Query 29767 AAAGGGCACCCCGAGCCCC 29785 |||||||| || || ||| Sbjct 2993 GAAGGGCACTCCAAGACCC 2975 >seq320246 Length=162 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 29647 CAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCC 29706 ||| ||||| | ||| | || || || |||||||||||||| ||||| || || ||||| Sbjct 46 CAGTGGTTCAATGTGATTCAGATACACATGAGCATCTCCCAGTGTGTGCACGAAATCTCC 105 Query 29707 CGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 29763 |||| || || ||||| || |||||||| |||||||| || |||||||| || Sbjct 106 TGGTTTGAGGTTAGTCACGTGTGCTATCATGTAGGTGAGGAGGGAATAGCTGGCAAT 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404565332901484