Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq295142 219 4e-52 seq129531 138 1e-27 seq120787 95.1 1e-14 >seq295142 Length=2525 Score = 219 bits (242), Expect = 4e-52 Identities = 575/862 (67%), Gaps = 14/862 (2%) Strand=Plus/Plus Query 4277 CTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATT 4336 ||| || ||||| || || || ||||| | ||| || |||||||| || || || || || Sbjct 1526 CTTCTCAAAGAAGTTCGTCTTTCCTTCCAGCGAGATGTTTTCCATGAAGTCGAATGGGTT 1585 Query 4337 AGTTGCGTTGTA-ATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATT 4395 | || | || ||||| ||| | || | |||||||| | ||| |||||||| | Sbjct 1586 CTCGACATTCCAGATCTTTTT-ACAGTCAAGCTCAACAAGCAACCTGTCGGCTACAAACT 1644 Query 4396 CTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-ATCTCACAGGTAGCGCGTAT 4454 | || || ||||||| || || || || || | | || ||||| |||| Sbjct 1645 CGATGTAGGTCTTCATGAGGCCGGCATTCATACCGATGAGAGAGCAG-GGTAGAGCGTCC 1703 Query 4455 GTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTA 4514 |||| ||||| ||||| || | || ||||| |||| || | | | | | ||| Sbjct 1704 GTCAGGAACTCCTGTTCGATCTTAACCGCTTCCCTGATGATCCCCTGGACATGAGCTTCC 1763 Query 4515 GATGGTTTATTTACTAAGTATCCA--AACAATAAACACGCAAAATCACAATGCAAACCTT 4572 ||||| || || | || || | |||| | ||| ||||| || || || | ||| | Sbjct 1764 GATGGCTTGTTGT-TGAG-ATGCTTGAACATCAGACATGCAAAGTCGCAGTGAAGACCCT 1821 Query 4573 CGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAA 4632 |||||||||| || ||||| || || || || | || ||||| | ||||| || || | Sbjct 1822 CGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGA 1881 Query 4633 GCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTA 4692 |||| || || |||||||| || || || ||||| ||||| ||||| || || || || | Sbjct 1882 GCCAGAAGATTGCGGCAAAGGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGCAA 1941 Query 4693 CTAATCGGGACCCGAACGAGCTG-GCTTTGTCT-TTAATCCATTTTAATGCCCAGTTAGC 4750 | | | | || || ||| ||| | || | ||||| | | ||||| | || Sbjct 1942 CGACCCTTGTACCAAA--GTCTGCGCTGTCGCTACTGATCCAGTCCAGCGCCCATTGCGC 1999 Query 4751 TTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGG 4810 ||| || | || ||||| || || | | || || || | | | | | | | || Sbjct 2000 TTTCTTGGTGACACACGGCATGGTCTCAACGGCATTGAAGAGGTAATCTCTCTGAGCTGA 2059 Query 4811 GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGC 4870 |||| || || ||||| || |||| ||||||||| || || || ||||| || || Sbjct 2060 ATCTTTGATGTATGTGTCGATGAGTAATGAATACATTTCTGAGTGGATGTTTTCAATTGC 2119 Query 4871 AATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTC 4930 |||||| || ||||| || || || || |||| | || ||||| | | ||| ||||| Sbjct 2120 AATCTGGAACCCGTAGAAACACCTCGCCTCTGCAATCTGCACTTCTTGGCTAAACCTTTC 2179 Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 || ||||| || || || ||||| || || || || || || || | |||||| || || Sbjct 2180 AACCAAGTTCTCATTGACAATACCATCGCTTGCAGCGAAGAAAGCAAGAACATGCGAGAT 2239 Query 4991 AAAGTACTGTTCGTCAGGCT-TAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAA 5049 |||| | || | | || | || || ||| ||| ||| ||||| | | ||| | Sbjct 2240 GAAGTGCCTCTCAT-TGTCTGTGAGCTTGGCCCAATGGTCCAAGTCTTTGGAAAGATCGA 2298 Query 5050 CTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGAT 5109 | || || | ||||| || || || ||||| || ||||| | ||| || ||| ||| Sbjct 2299 CCTCCTCGGCCGTCCAGAAGGATGCCTCCGCCTTCTTGTAGAATTGCCAGATGTCATGAT 2358 Query 5110 ACTGAATCGGAAGTATGACAAA 5131 | || || || | |||||||| Sbjct 2359 ATTGGATGGGGAAGATGACAAA 2380 >seq129531 Length=564 Score = 138 bits (152), Expect = 1e-27 Identities = 374/566 (66%), Gaps = 6/566 (1%) Strand=Plus/Minus Query 4353 TTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATG 4412 |||| ||| | || | |||||||| | ||| || ||||| || || || ||||| Sbjct 563 TTTTTACAGTCAAGCTCAACAAGCAACCTGTCGGCCACAAACTCGATGTAGGTCTTCATG 504 Query 4413 AGTTCGCAGTTAATTCCAATTA-ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTC 4471 || || || || || || | | || ||||| |||| |||| ||||| ||||| Sbjct 503 AGGCCGGCATTCATACCGATGAGAGAGCAG-GGTAGGGCGTCCGTCAGGAACTCCTGTTC 445 Query 4472 TATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAA 4531 || | || ||||| |||| || | | | | | ||| ||||| || || | Sbjct 444 GATCTTGACCGCTTCCCTGATGATCCCCTGGACATGAGCTTCCGATGGCTTGTTGTTGAG 385 Query 4532 GTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTC 4591 | | |||| | ||| ||||| || || || | ||| ||||||||||| || ||||| Sbjct 384 ATGTTTGAACATCAGACAGGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTC 325 Query 4592 GTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAA 4651 || || || || | || ||||| | ||||| || || ||||| || || || ||||| Sbjct 324 ATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATCGCAGCAAA 265 Query 4652 TGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGA 4711 || || || ||||| ||||| ||||| || || || || || | | | || || Sbjct 264 GGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTGCCAAA--G 207 Query 4712 GCTG-GCTTTGTCT-TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGA 4769 ||| ||| | || | ||||| | || ||||| | ||||| || | ||||| || Sbjct 206 TCTGCGCTGTCGCTACTGATCCAGTCCAACGCCCATTGTGCTTTCTTGGTGACGCATGGC 147 Query 4770 ATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCT 4829 || || | | || || || | | | | | | | ||| |||| || || ||||| Sbjct 146 ATGGTCTCAACGGCATTGAAGAGGTAATCTCTCTGAGCTGGATCTTTGATGTATGTGTCG 87 Query 4830 ATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAG 4889 || |||| ||||||||| || || || ||||| || |||||||| || ||||| || Sbjct 86 ATGAGTAATGAATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAA 27 Query 4890 CATCTAGCTTCTGTTACTTGAACTTC 4915 || || || |||| | || ||||| Sbjct 26 CACCTTGCCTCTGCAATCTGCACTTC 1 >seq120787 Length=4847 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4863 TCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAA 4922 || |||||||||||||| || || ||||| | || |||| || |||||||| | || Sbjct 881 TCCATAGCAATCTGAAAGCCATAGAAGCACTTGGCCTCTGGTATCTGAACTTCTTGACTG 940 Query 4923 AATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACA 4982 || ||||| || | ||| || || || ||||| ||||| |||||||| |||||||| || Sbjct 941 AACCTTTCCACAAGGTTCTCATTCACGATACCATCACTTGCTGCAAAGAACGCCAACACG 1000 Query 4983 TG 4984 || Sbjct 1001 TG 1002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425369564720402