Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_030792.1 Length=32690 Score E Sequences producing significant alignments: (Bits) Value seq201746 127 4e-25 >seq201746 Length=230 Score = 127 bits (140), Expect = 4e-25 Identities = 154/200 (77%), Gaps = 10/200 (5%) Strand=Plus/Minus Query 5823 TGACGGTGTCCTCTTCCAGGTGGTCAGAAAAGACCGtttttttGTTGTCCAGCTTGG-TG 5881 ||| |||| || | |||| |||||||||| ||| | |||| |||| ||||||| || Sbjct 223 TGAGGGTG-CCGCATCCATCTGGTCAGAAA-GACAATCTTTTG--TGTC-AGCTTGGGTG 169 Query 5882 GCGAACGAGCCGTAGAGGGCGTTGGAGAGCAGCTTTGCGAT-GCTGCGCATGG--TTTGG 5938 || ||||| ||||||||||||||||| |||| ||| ||||| | ||||| || ||||| Sbjct 168 GCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGGAGCGCAGGGGTTTTGG 109 Query 5939 TTCTTTTCTCGGTCGGCCTTCTCTTTGGCCGCGATGTTGAGTTGCACGTACTCTTTGGCT 5998 || ||| | || ||||| ||| |||||||||||||| || |||||||| || || Sbjct 108 TT-TTTGCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCGCGCGCA 50 Query 5999 ATGCACTTCCATTCTGGAAA 6018 | |||| |||||| ||||| Sbjct 49 ACGCACCGCCATTCGGGAAA 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104085884951856