Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq295142 268 1e-66 seq305029 244 1e-59 seq129531 150 2e-31 seq289945 141 1e-28 seq289887 127 3e-24 >seq295142 Length=2525 Score = 268 bits (296), Expect = 1e-66 Identities = 606/900 (67%), Gaps = 27/900 (3%) Strand=Plus/Plus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896 |||||||||||| || |||||||| || ||||| || || || || || ||||| Sbjct 1493 CATAACTCCCATCAGCTGGTATTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCTTC 1552 Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCC 47956 || || || |||||||| || || ||||| || | |||| | || |||||| | | Sbjct 1553 CAGCGAGATGTTTTCCATGAAGTCGAATGGGTTCTCGACATTCCAGATCTTTTTACAGTC 1612 Query 47957 TAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATT 48016 | || || || || || || || || || || || | ||||| | | ||| Sbjct 1613 AAGCTCAACAAGCAACCTGTCGGCTACAAACTCGATGTAGGTCTTCATGAGGCCGGCATT 1672 Query 48017 CATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGC 48076 ||| || || || |||||||| ||||| || ||||| |||||||| | || || Sbjct 1673 CATACCGATGAGAGAGCAGGGTAGAGCGTCCGTCAGGAACTCCTGTTCGATCTTAACCGC 1732 Query 48077 ATCCACTATTATC-----GATGTTACCGTTTCC--TCACTTGGTGGATACAACAAATGTT 48129 ||| || ||| || | | | |||| | |||| || | | || | Sbjct 1733 TTCCCTGATGATCCCCTGGACATGAGC--TTCCGATGGCTTGTTGTTGAGA-----TGCT 1785 Query 48130 TAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAG 48189 | ||||| | ||||||||| || || |||||||| || ||||| || || | ||| || | Sbjct 1786 TGAACATCAGACATGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTG 1845 Query 48190 AAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATC 48249 | || || || || ||||| || || ||||| |||||||| || ||||| || || || | Sbjct 1846 AGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAAGGAAC 1905 Query 48250 CAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA--CTG-G 48306 | || ||||| ||||| ||||| || || || || | || | | | || ||| | Sbjct 1906 CCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCT-TGTACCAAAGTCTGCG 1964 Query 48307 CT-TCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTT 48365 || ||| | ||||| | ||||| | || ||||| | ||||| ||||| || Sbjct 1965 CTGTCGCTACTGATCCAGTCCAGCGCCCATTGCGCTTTCTTGGTGACACACGGCATGGTC 2024 Query 48366 TCTATAGCATTAAAGAGAAAGtttttttCATTGCT--ATCTTTAACGTAAGTATCTATTA 48423 || | ||||| ||||| | | | | | | ||| |||||| | ||| || || || | Sbjct 2025 TCAACGGCATTGAAGAGGTAATCTCTCTGA--GCTGAATCTTTGATGTATGTGTCGATGA 2082 Query 48424 --AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACA 48481 || || ||||||||| ||||| || ||||||||||| ||||| || ||||| ||||| Sbjct 2083 GTAATGA--ATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAACA 2140 Query 48482 TCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTAT 48541 ||||| |||| ||||| || || | ||| | |||| |||| |||||||| || || Sbjct 2141 CCTCGCCTCTGCAATCTGCACTTCTTGGCTAAACCTTTCAACCAAGTTCTCATTGACAAT 2200 Query 48542 TCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGT 48601 ||||| || ||||| || || || | ||||| || || | | || ||| || Sbjct 2201 ACCATCGCTTGCAGCGAAGAAAGCAAGAACATGCGAGATGAAGTGCCTCTCATTGTCTGT 2260 Query 48602 CAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGA 48661 || || ||| | | | ||||| || | ||| || || || || ||||| || || Sbjct 2261 GAGCTTGGCCCAATGGTCCAAGTCTTTGGAAAGATCGACCTCCTCGGCCGTCCAGAAGGA 2320 Query 48662 TGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 |||||| || || || || | | ||| || ||| |||||||| ||||| || ||||| Sbjct 2321 TGCCTCCGCCTTCTTGTAGAATTGCCAGATGTCATGATATTGGATGGGGAAGATGACAAA 2380 >seq305029 Length=127772 Score = 244 bits (270), Expect = 1e-59 Identities = 379/534 (71%), Gaps = 8/534 (1%) Strand=Plus/Minus Query 77706 ACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTG 77765 ||||||| || | | ||| | || ||||| ||||| || ||||| |||||||| || Sbjct 94094 ACCTCATCAGGACTTGAATACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTT 94035 Query 77766 CCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTC 77825 |||| ||||||||||| ||||| | || || |||||| || || ||| | || || Sbjct 94034 CCCAAGTTTTGTTGGTTACTCTTCCTGTTACAATGGTCCTTGTACAGCATATATGGGGTA 93975 Query 77826 CCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGAT 77885 || || || | || ||||| || || | | ||| | || || | || ||| | Sbjct 93974 CCAGTCTCTGTTTGAGATTCAATGATGGCATACCACA-GAGCCTGGGCCTT--CATTGTC 93918 Query 77886 TTG-TATCGCCTCTCTCTTTC--ATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAA 77942 || || | || |||||| ||| | || ||| ||||||||||||||||||| Sbjct 93917 TTCCTACCCTTTCCTTCTTTCTCATACTTCTCGTAGAGCTTTTCAAATTCATCTCCCCAA 93858 Query 77943 ACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTA 78002 || | || | ||||||||||||| |||||||| | | |||||||||||| | | | Sbjct 93857 ACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGGGTCCAGTCACCATCAGCTTCA 93798 Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 || | ||||||||||||||||| ||||| || ||| || |||||||||| ||| ||| Sbjct 93797 ACCCTCTTCATAAAGAGATCAGGGATCCAGAGGGCATAGAACAGATCTCGGGCTCTCTGT 93738 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 || || || || ||||| ||| || | || || ||||||| ||||||||| Sbjct 93737 TCCTCCTTGCCGTGGTTCTTCTTACAGTCTAAGAAATCATGGATATCAGCATGCCATGGC 93678 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCG 78182 ||||| || || || | | ||||| || ||||| ||||||||||||| |||||| || Sbjct 93677 TCTAGGTAGATGGCAAAGGCACCAGGACGCTTATTGCCTCCCTGATCTACATATCTAGCT 93618 Query 78183 GTGTTATTATAAACTCTCAACATTGG-AATAATACCGTTAGATGTTCCATTTGT 78235 || || || || || | | |||||| ||||| ||| || || | |||||||| Sbjct 93617 GTATTGTTGTACACACGAAGCATTGGTAATAA-ACCATTGGAGTTGCCATTTGT 93565 Score = 123 bits (136), Expect = 3e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 77916 TATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCAC 77975 || ||| ||||||||||||||||||||| | || | ||||||||||||| |||||| Sbjct 92226 TAGAGCTTTTCAAATTCATCTCCCCAAACGTTTTCTAGGCCAGGGCATTCATGAGGGCAC 92167 Query 77976 ATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGA 78035 || | || |||||||||||| | | ||| | ||||| ||||||||||| ||||| || Sbjct 92166 ATGAGTGTCCAGTCACCATCGGCTTCAACCCTCTTCATGAAGAGATCAGGGATCCAGAGG 92107 Query 78036 GCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073 ||| ||||| |||| | ||| ||||| || || || Sbjct 92106 GCATAGAATAGGTCTCTAGCTCTCTGTTCCTCCTTGCC 92069 >seq129531 Length=564 Score = 150 bits (166), Expect = 2e-31 Identities = 272/389 (70%), Gaps = 13/389 (3%) Strand=Plus/Minus Query 48125 ATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTC 48184 |||||| ||||| | ||| ||||| || || |||||||| || ||||| || || | ||| Sbjct 384 ATGTTTGAACATCAGACAGGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTC 325 Query 48185 GTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAA 48244 || || || || || || ||||| || || ||||| |||||||| || || || || || Sbjct 324 ATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATCGCAGCAAA 265 Query 48245 AGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA-- 48302 || || || ||||| ||||| ||||| || || || || | || | | | || Sbjct 264 GGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCT-TGTGCCAAAGT 206 Query 48303 CTG-GCT-TCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCA 48360 ||| ||| ||| | ||||| ||||| | || ||||| | || || |||| Sbjct 205 CTGCGCTGTCGCTACTGATCCAGTCCAACGCCCATTGTGCTTTCTTGGTGACGCATGGCA 146 Query 48361 TTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCT--ATCTTTAACGTAAGTATC 48418 | || || | ||||| ||||| | | | | | | ||| |||||| | ||| || || Sbjct 145 TGGTCTCAACGGCATTGAAGAGGTAATCTCTCTGA--GCTGGATCTTTGATGTATGTGTC 88 Query 48419 TATTA--AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAA 48476 || | || || ||||||||| ||||| || ||||||||||| ||||| || ||||| Sbjct 87 GATGAGTAATGA--ATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAG 30 Query 48477 AAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||| || || |||| ||||| || || Sbjct 29 AAACACCTTGCCTCTGCAATCTGCACTTC 1 >seq289945 Length=532 Score = 141 bits (156), Expect = 1e-28 Identities = 261/382 (68%), Gaps = 3/382 (1%) Strand=Plus/Minus Query 76811 TGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCT 76870 ||| || || || |||||||| || || |||||| |||||| | |||| ||||| || Sbjct 382 TGTGCGAAGGTAATACATACCCGTCTTCAGACCCGATCTCCATGCAAAGAAGTGCATACT 323 Query 76871 TGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGAT 76930 || || ||| ||| | || || || || |||||||| | || ||||| ||||| || Sbjct 322 GGTTAGCTTGCCATAGTTTGGTTCAGCAATGTGAATATTAAGTGATTGACTCTGATCAAT 263 Query 76931 GAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGT 76990 | | || || | ||| | ||||| | |||| ||||| || | || ||||||| ||| Sbjct 262 GTATGCACCGCGGTCAACAGCCATCTGAATAACAGTCTTCTGTGAGATCTCCCAAACAGT 203 Query 76991 TTTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATC 77047 || | | | ||||| |||||||| | || | || ||||| || ||| | Sbjct 202 CTTATACAATGCCTTGATGTCATCTGGGATTGATGGAATGTTCTGAATAGATCCAGAGTG 143 Query 77048 TGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAG 77107 | || | ||||||| || |||||| ||||| | | || || | | ||||| Sbjct 142 AGCAATGAGCATATTCTTCATCTCATCAGACCACAGACCCATGTCGGTAAGGTCCCTAAG 83 Query 77108 GAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACT 77167 |||||| |||| || | ||||| ||||| || | || | ||| ||||| |||||||| Sbjct 82 AAGATGATGATTGACGACCTGAAACTCTCCTGAAAGCACACGACGCGTGTAGATATTACT 23 Query 77168 GGTATATGGTTCCACAGATTCA 77189 ||| || || || | |||||| Sbjct 22 GGTGTACGGCTCGATGGATTCA 1 >seq289887 Length=335 Score = 127 bits (140), Expect = 3e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 77916 TATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCAC 77975 || ||| ||||||||||||||||||||| | || | ||||||||||||| |||||| Sbjct 177 TAGAGCTTTTCAAATTCATCTCCCCAAACGTTTTCTAGGCCAGGGCATTCATGAGGGCAC 236 Query 77976 ATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGA 78035 || | || |||||||||||| | | ||| | ||||| ||||||||||| ||||| || Sbjct 237 ATGAGTGTCCAGTCACCATCGGCTTCAACCCTCTTCATGAAGAGATCAGGGATCCAGAGG 296 Query 78036 GCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073 ||| || |||||||| | ||| ||||| || || || Sbjct 297 GCATAGAACAGATCTCGAGCTCTCTGTTCCTCCTTGCC 334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691865863492160