Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq295142 279 7e-70 seq305029 244 2e-59 seq289945 159 5e-34 seq129531 158 2e-33 seq289887 113 6e-20 seq306440 93.3 6e-14 seq36655 93.3 6e-14 >seq295142 Length=2525 Score = 279 bits (308), Expect = 7e-70 Identities = 606/898 (67%), Gaps = 23/898 (3%) Strand=Plus/Plus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 |||||||||||| ||||||||||| || ||||| || || || || || ||||| Sbjct 1493 CATAACTCCCATCAGCTGGTATTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCTTC 1552 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCC 46445 || || || |||||||| || || || || || ||||| | || |||||| | | Sbjct 1553 CAGCGAGATGTTTTCCATGAAGTCGAATGGGTTCTCGACATTCCAGATCTTTTTACAGTC 1612 Query 46446 TAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATT 46505 | || || || || || || || || || || || || ||||| | | ||| Sbjct 1613 AAGCTCAACAAGCAACCTGTCGGCTACAAACTCGATGTAGGTCTTCATGAGGCCGGCATT 1672 Query 46506 CATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGC 46565 ||| || ||||| | |||||||| ||||| || ||||| ||||| || | || || Sbjct 1673 CATACCGATGAGAGAGCAGGGTAGAGCGTCCGTCAGGAACTCCTGTTCGATCTTAACCGC 1732 Query 46566 ATCCGATATTATC-----GATGTTACTGTTTCC--TCACTTGGTGGATGCATCAAATGTT 46618 ||| || ||| || | | | |||| | |||| || | | ||| | Sbjct 1733 TTCCCTGATGATCCCCTGGACATGA--GCTTCCGATGGCTTGTTGT-----TGAGATGCT 1785 Query 46619 TAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAG 46678 | ||||| | ||||||||| || || ||||| || || ||||| || || | ||| || | Sbjct 1786 TGAACATCAGACATGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTG 1845 Query 46679 AAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATC 46738 | || || ||||| ||||| || || || || |||||||| || || || || || || | Sbjct 1846 AGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAAGGAAC 1905 Query 46739 CAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTG-G 46795 | || ||||| ||||| ||||| || ||||| || || | || | | | || ||| | Sbjct 1906 CCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCT-TGTACCAAAGTCTGCG 1964 Query 46796 CA-TCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTT 46854 | || || ||||| | ||||| | || || || | ||||| ||||| || Sbjct 1965 CTGTCGCTACTGATCCAGTCCAGCGCCCATTGCGCTTTCTTGGTGACACACGGCATGGTC 2024 Query 46855 TCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTA-- 46912 || | ||||| ||||| | | | | | | | |||||| | ||||| || || | Sbjct 2025 TCAACGGCATTGAAGAGGTAATCTCTCTGAGCTGAATCTTTGATGTATGTGTCGATGAGT 2084 Query 46913 AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATC 46972 || || |||||||||||| || ||||||||||| || ||||| || ||||| ||||| | Sbjct 2085 AATGA--ATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAACACC 2142 Query 46973 TTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTC 47032 | || || | |||||| || ||| | ||| | |||| ||| |||||||| || || | Sbjct 2143 TCGCCTCTGCAATCTGCACTTCTTGGCTAAACCTTTCAACCAAGTTCTCATTGACAATAC 2202 Query 47033 CATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA 47092 |||| || ||||| || || || | ||||| || || | | |||| | || | Sbjct 2203 CATCGCTTGCAGCGAAGAAAGCAAGAACATGCGAGATGAAGTGCCTCTCATTGTCTGTGA 2262 Query 47093 GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACG 47152 | || ||| | | | ||||| || | ||| || || || || |||||||| || | Sbjct 2263 GCTTGGCCCAATGGTCCAAGTCTTTGGAAAGATCGACCTCCTCGGCCGTCCAGAAGGATG 2322 Query 47153 CCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 |||| || || || || | | ||| || ||| |||||||||| || || || ||||| Sbjct 2323 CCTCCGCCTTCTTGTAGAATTGCCAGATGTCATGATATTGGATGGGGAAGATGACAAA 2380 >seq305029 Length=127772 Score = 244 bits (270), Expect = 2e-59 Identities = 379/534 (71%), Gaps = 8/534 (1%) Strand=Plus/Minus Query 76301 ACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTT 76360 ||||||| || | | | ||| | || ||||| || || || ||||| || ||||| ||| Sbjct 94094 ACCTCATCAGGACTTGAATACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTT 94035 Query 76361 CCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTT 76420 || | ||||||||||| ||||| ||||||| |||||| || || | | | || || Sbjct 94034 CCCAAGTTTTGTTGGTTACTCTTCCTGTTACAATGGTCCTTGTACAGCATATATGGGGTA 93975 Query 76421 CCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAG-CTTTTATTATAGA 76479 ||||| || | || ||||| || || | | ||| | || || | | || ||| | Sbjct 93974 CCAGTCTCTGTTTGAGATTCAATGATGGCATACCACA-GAGCCTGGGCCTTCATTGTC-- 93918 Query 76480 TTTGTATCGCTTCTCTCTTTC--ATATTGTGTATATAACCGTTCAAATTCATCTCCCCAA 76537 || || | ||| |||||| ||| | || | | ||||||||||||||||||| Sbjct 93917 TTCCTACCCTTTCCTTCTTTCTCATACTTCTCGTAGAGCTTTTCAAATTCATCTCCCCAA 93858 Query 76538 ACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTA 76597 || | || | ||||| ||||||| || ||||| | | ||| |||||||| | | | Sbjct 93857 ACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGGGTCCAGTCACCATCAGCTTCA 93798 Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657 |||| ||||||||||||||||| ||||| || ||| || |||||||||| ||| || Sbjct 93797 ACCCTCTTCATAAAGAGATCAGGGATCCAGAGGGCATAGAACAGATCTCGGGCTCTCTGT 93738 Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 || || || || ||||| ||| |||| ||| || ||||||| ||||||||| Sbjct 93737 TCCTCCTTGCCGTGGTTCTTCTTACAGTCTAAGAAATCATGGATATCAGCATGCCATGGC 93678 Query 76718 TCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCA 76777 ||||| || || || | |||| || || ||||| ||||||||||||| |||||| || Sbjct 93677 TCTAGGTAGATGGCAAAGGCACCAGGACGCTTATTGCCTCCCTGATCTACATATCTAGCT 93618 Query 76778 GTGTTATTATAAACTCTCAACATTGG-AATAATGCCGTTAGATGTACCATTTGT 76830 || || || || || | | |||||| ||||| || || || | |||||||| Sbjct 93617 GTATTGTTGTACACACGAAGCATTGGTAATAA-ACCATTGGAGTTGCCATTTGT 93565 Score = 109 bits (120), Expect = 8e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||||||||||||||||||||| | || | ||||| ||||||| || ||||| | || Sbjct 92218 TTCAAATTCATCTCCCCAAACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGTGT 92159 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| |||||||| | | ||||| ||||| ||||||||||| ||||| || ||| || Sbjct 92158 CCAGTCACCATCGGCTTCAACCCTCTTCATGAAGAGATCAGGGATCCAGAGGGCATAGAA 92099 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCC 76668 ||| |||| | ||| |||| || || || Sbjct 92098 TAGGTCTCTAGCTCTCTGTTCCTCCTTGCC 92069 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 76301 ACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTT 76360 ||||||| || | | | ||| | || ||||| || || || ||||| || ||||| ||| Sbjct 95789 ACCTCATCAGGACTTGAATACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTT 95730 Query 76361 CCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTT 76420 || | ||||||||||| ||||| ||||||| |||||| || || | | | || || Sbjct 95729 CCCAAGTTTTGTTGGTTACTCTTCCTGTTACAATGGTCCTTGTAGAGCATATATGGGGTA 95670 Query 76421 CCAGTTTCAATCTGTGATTCGATAAT 76446 ||||| || | || ||||| || || Sbjct 95669 CCAGTCTCTGTTTGAGATTCAATGAT 95644 >seq289945 Length=532 Score = 159 bits (176), Expect = 5e-34 Identities = 287/414 (69%), Gaps = 9/414 (2%) Strand=Plus/Minus Query 75377 GTGAACTGAAT-GGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAG 75435 |||||||| || ||| || | ||||| ||| || || || |||||||| || || || Sbjct 411 GTGAACTGGATAGGGTTAGCA-GCTGGGCGTGTGCGAAGGTAATACATACCCGTCTTCAG 353 Query 75436 ACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTAT 75495 |||| |||||| | |||| ||||| || ||||| ||| ||| | || || || || Sbjct 352 ACCCGATCTCCATGCAAAGAAGTGCATACTGGTTAGCTTGCCATAGTTTGGTTCAGCAAT 293 Query 75496 ATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTAT 75555 |||||||| | || ||||| ||||| ||| | || || | ||| | ||||| | || Sbjct 292 GTGAATATTAAGTGATTGACTCTGATCAATGTATGCACCGCGGTCAACAGCCATCTGAAT 233 Query 75556 AATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAG 75615 || ||||| || | || ||||||| ||| || | | | ||||| |||||||| | Sbjct 232 AACAGTCTTCTGTGAGATCTCCCAAACAGTCTTATACAATGCCTTGATGTCATCTGG--G 175 Query 75616 ATT--TGTA---TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCA 75670 ||| || | || ||||| ||||| | || || | ||||||| ||||||||| Sbjct 174 ATTGATGGAATGTTCTGAATAGATCCAGAGTGAGCAATGAGCATATTCTTCATCTCATCA 115 Query 75671 TTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCT 75730 ||||| | ||||| | | ||||| |||||| |||| || | ||||| ||| Sbjct 114 GACCACAGACCCATGTCGGTAAGGTCCCTAAGAAGATGATGATTGACGACCTGAAACTCT 55 Query 75731 CCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 75784 || || | || | || ||||| ||||||||||| || || || | |||||| Sbjct 54 CCTGAAAGCACACGACGCGTGTAGATATTACTGGTGTACGGCTCGATGGATTCA 1 >seq129531 Length=564 Score = 158 bits (174), Expect = 2e-33 Identities = 368/546 (67%), Gaps = 23/546 (4%) Strand=Plus/Minus Query 46462 CTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTG 46521 || || || || || || || || || ||||| | | |||||| || ||||| | Sbjct 536 CTGTCGGCCACAAACTCGATGTAGGTCTTCATGAGGCCGGCATTCATACCGATGAGAGAG 477 Query 46522 ACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC--- 46578 ||||| || ||||| || ||||| ||||| || |||| || ||| || ||| Sbjct 476 CAGGGTAGGGCGTCCGTCAGGAACTCCTGTTCGATCTTGACCGCTTCCCTGATGATCCCC 417 Query 46579 --GATGTTACTGTTTCC--TCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGC 46634 || | | | |||| | |||| || | | |||||| ||||| | ||| || Sbjct 416 TGGACATGA--GCTTCCGATGGCTTGTTGT-----TGAGATGTTTGAACATCAGACAGGC 364 Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694 ||| || || ||||| || || ||||| || || | ||| || || || || ||||| || Sbjct 363 AAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCTGG 304 Query 46695 CATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCC 46754 ||| || || || || |||||||| || || || || || || || || ||||| ||||| Sbjct 303 CATCAGACCTCGTTTCTTGAGCCAGAAGATCGCAGCAAAGGAACCCGAGAAGAAGATGCC 244 Query 46755 TTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTG-GCA-TCATTATGAATCC 46810 ||||| || ||||| || || | || | | | || ||| || || || |||| Sbjct 243 CTCTACTGCTGCGAAAGCAACGACCCT-TGTGCCAAAGTCTGCGCTGTCGCTACTGATCC 185 Query 46811 ACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 46870 | ||||| | || || || | || || ||||| || || | ||||| |||| Sbjct 184 AGTCCAACGCCCATTGTGCTTTCTTGGTGACGCATGGCATGGTCTCAACGGCATTGAAGA 125 Query 46871 GAAAGtttttttCATCACTATCTTTAACATATGTATCTATTA--AAAGACTATACATTTC 46928 | | | | | | | | |||||| | ||||| || || | || || ||||||||| Sbjct 124 GGTAATCTCTCTGAGCTGGATCTTTGATGTATGTGTCGATGAGTAATGA--ATACATTTC 67 Query 46929 TGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTG 46988 ||| || ||||||||||| || ||||| || ||||| ||||| ||||| || | |||||| Sbjct 66 TGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAACACCTTGCCTCTGCAATCTG 7 Query 46989 TACCTC 46994 || || Sbjct 6 CACTTC 1 >seq289887 Length=335 Score = 113 bits (124), Expect = 6e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||||||||||||||||||||| | || | ||||| ||||||| || ||||| | || Sbjct 185 TTCAAATTCATCTCCCCAAACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGTGT 244 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| |||||||| | | ||||| ||||| ||||||||||| ||||| || ||| || Sbjct 245 CCAGTCACCATCGGCTTCAACCCTCTTCATGAAGAGATCAGGGATCCAGAGGGCATAGAA 304 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCC 76668 |||||||| | ||| |||| || || || Sbjct 305 CAGATCTCGAGCTCTCTGTTCCTCCTTGCC 334 >seq306440 Length=70067 Score = 93.3 bits (102), Expect = 6e-14 Identities = 115/154 (75%), Gaps = 5/154 (3%) Strand=Plus/Plus Query 46705 CGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCC 46764 || || |||| ||| || || || || || || ||||| || ||||| |||||||| || Sbjct 67538 CGTTTCTTGAACCAGAAAATGGCAGCAAACGAGCCAGAGAAAAATATTCCTTCTACTGCA 67597 Query 46765 GCGAATGCGACAAGTCTCTCTCCGTA---ACTGGCATCATTATG-AATCCACCTTTGAGC 46820 |||||||| || | ||||| || | ||| | || | ||| ||||||| | |||| Sbjct 67598 GCGAATGCCACCAACCTCTCACCAAAGGTACTCTCCTC-TGATGCAATCCACTTGAGAGC 67656 Query 46821 CCAATCAGCCTTTTTCTTTACACAAGGCATTGTT 46854 ||||||||| || ||||||||| | |||| |||| Sbjct 67657 CCAATCAGCTTTCTTCTTTACAAATGGCACTGTT 67690 >seq36655 Length=16638 Score = 93.3 bits (102), Expect = 6e-14 Identities = 115/154 (75%), Gaps = 5/154 (3%) Strand=Plus/Plus Query 46705 CGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCC 46764 || || |||| ||| || || || || || || ||||| || ||||| |||||||| || Sbjct 4060 CGTTTCTTGAACCAGAAAATGGCAGCAAATGAGCCAGAGAAAAATATTCCTTCTACCGCA 4119 Query 46765 GCGAATGCGACAAGTCTCTCTCCGTA---ACTGGCATCATTATG-AATCCACCTTTGAGC 46820 ||||| || || | ||||| ||| | ||| | || | ||| ||||||| | |||| Sbjct 4120 GCGAACGCCACCAACCTCTCACCGAAGGTACTCTCCTC-TGATGCAATCCACTTCAGAGC 4178 Query 46821 CCAATCAGCCTTTTTCTTTACACAAGGCATTGTT 46854 ||||||||| || ||||||||| | |||| |||| Sbjct 4179 CCAATCAGCTTTCTTCTTTACAAATGGCACTGTT 4212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710057763166080