Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq295142 185 9e-42 seq152047 141 1e-28 >seq295142 Length=2525 Score = 185 bits (204), Expect = 9e-42 Identities = 403/601 (67%), Gaps = 2/601 (0%) Strand=Plus/Plus Query 23493 ATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTC 23552 || ||| |||| | ||||||||| || || || || || || || || || || | ||| Sbjct 1781 ATGCTTGAACATCAGACATGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTC 1840 Query 23553 ATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAA 23612 ||| || || || | |||||||| | |||||||| || | ||| || ||||| ||||| Sbjct 1841 ATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAA 1900 Query 23613 TGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGT 23672 || || || ||||| || ||||| || || || || || || | | ||||||||| Sbjct 1901 GGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTACCAAAGTC 1960 Query 23673 TGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAAT 23732 ||| | | | ||||| | | ||| | || ||| | |||||| || Sbjct 1961 TGCGCTGTCGCTACTGATCCAGTCCAGCGCCCATTGCGCTTTCTTGGTGACACACGGCAT 2020 Query 23733 TGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAAT 23792 || |||| || || ||||| || | | | | |||| | || ||||| || || Sbjct 2021 GGTCTCAACGGCATTGAAGAGGTAATCTCTCTGAGCTGAATCTTTGATGTATGTGTCGAT 2080 Query 23793 TAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACA 23852 ||||| ||||||||| || || || |||||||| |||||||| ||||| || ||||| Sbjct 2081 GAGTAATGAATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAACA 2140 Query 23853 TCTAGCTTCAGACAAT-TGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAA 23911 || || || | |||| || || || | ||| |||| | | || || || || |||| Sbjct 2141 CCTCGCCTCTG-CAATCTGCACTTCTTGGCTAAACCTTTCAACCAAGTTCTCATTGACAA 2199 Query 23912 TACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTG 23971 ||||||| || ||||| |||||||||||||||| || || || || |||| || Sbjct 2200 TACCATCGCTTGCAGCGAAGAAAGCAAGAACATGCGAGATGAAGTGCCTCTCATTGTCTG 2259 Query 23972 ATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAAC 24031 | || ||||| | | ||||| || | ||| || || || | ||||| || Sbjct 2260 TGAGCTTGGCCCAATGGTCCAAGTCTTTGGAAAGATCGACCTCCTCGGCCGTCCAGAAGG 2319 Query 24032 TTGCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGA 24091 |||| || ||| || | | |||| || |||| || ||| || || || || || | Sbjct 2320 ATGCCTCCGCCTTCTTGTAGAATTGCCAGATGTCATGATATTGGATGGGGAAGATGACAA 2379 Query 24092 A 24092 | Sbjct 2380 A 2380 >seq152047 Length=228 Score = 141 bits (156), Expect = 1e-28 Identities = 101/116 (87%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| |||||| ||||||||||||||||||||| ||||| ||||||||||| ||||| Sbjct 111 TCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACAATCTCAGCTCACTGCAAGCTCCG 170 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAG 8459 ||||||||||| | || |||||||| ||||||||||| ||||||||||| ||||| Sbjct 171 CCTCCCGGGTTTATGCCATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGACTACAG 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519383835031600