Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq80839 113 4e-20 seq283656 100 3e-16 seq256240 82.4 7e-11 >seq80839 Length=604 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | || ||||| || || |||||||| ||||| ||||| || Sbjct 230 CCACCACGTAGACGAAGAACAAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCTGAT 171 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| |||| ||||| ||||| | ||| Sbjct 170 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGA 111 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | || || ||| ||| || ||| | | | ||||| | ||||||| Sbjct 110 ATACCTTCTTTATCCTGGATCTTAGCCTTGACATTCTCTATGGTGTCAGAAGGCTCCACC 51 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || |||||||| ||||| ||||| |||||||| Sbjct 50 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAATATCTGCAT 4 >seq283656 Length=776 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || || | | ||||| || || ||| ||||||||| || || ||||| | Sbjct 559 CGCCACCACGGAGCCTAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCAG 618 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | || ||||| | || || ||||||||||||||||| ||||||||||| || || | | Sbjct 619 ACAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCGGGAG 678 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | | ||||||| | ||| |||| || | || | | ||| || || | ||| Sbjct 679 GGATACCTTCCTTGT-CTTGAATTTTGGCCTTTACATTTTCAATAGTATCACTGGGTTCC 737 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 ||||| | || || ||||| ||||||| || || ||| Sbjct 738 ACCTCGAGGGTGATGGTTTTCCCCGTCAATGTTTTCACG 776 >seq256240 Length=3304 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || || | | ||||| || || ||| ||||||||| || || ||||||| Sbjct 1271 CGCCACCACGGAGCCTAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGG 1212 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 | || ||||| | || || |||||||||||||| || ||||| ||||| || || Sbjct 1211 ACAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATC 1157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460438638032800