Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3918 107 2e-18 >seq3918 Length=790838 Score = 107 bits (118), Expect = 2e-18 Identities = 172/245 (70%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 16587 CCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGA 16646 ||| ||||||||| || || || ||||| |||||||| || || | || ||| |||| Sbjct 707525 CCAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAATGCAAGTACATGCGAGATGA 707584 Query 16647 AATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTT 16706 ||| |||||| || | || | | ||| | || | |||||||| | ||| |||| Sbjct 707585 AATGTTTTTCATCGTCCTTCAGGTTCTCCCAGTGGTTCATGTCTTTGGACAGATCTACTT 707644 Query 16707 CTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATT 16766 | || | ||||| ||| || |||||||||| ||||| |||||||| || | ||| | Sbjct 707645 CCTCAGCAGTCCAGAAGGAGGCTTCTGCCTTTTTGTACATCTTCCAAATGTCGTGGTACT 707704 Query 16767 GTATGGGAAATACGACGTATCTATCTAAGGAT--TCCTTTAACACGGGTTCATCTTCCAT 16824 ||||||||||| || | | | | |||| ||||| | || || || |||| ||| Sbjct 707705 TGATGGGAAATACAACAAAGCGACGT--GGATTGTCCTTCAGCAGTGGCTCTTCTTTCAT 707762 Query 16825 TTTTT 16829 || || Sbjct 707763 TTGTT 707767 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || || || ||||||||||||||||| ||||| |||||||| || ||||| || Sbjct 706242 ATGTATGTGTCGATAAGTAAACTGTACATTTCAGAGTGAATGTTCTCCATAGCTATTTGG 706301 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC 16569 ||||| ||||| |||| || || | | ||| ||||| Sbjct 706302 AATCCGTAGAAACATCTTGCTTCTGTTGCTTGAACTTC 706339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510885993856560