Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3918 116 4e-21 seq3345 98.7 1e-15 >seq3918 Length=790838 Score = 116 bits (128), Expect = 4e-21 Identities = 161/223 (72%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| || || || ||||| |||||| || || || || ||||| | || | ||| | Sbjct 705759 CCTCATCCCTGCTTATTAACTCGTTGCTGAATGTAAGACCAGGCATAATTCCCCTCTTCT 705818 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||||| ||||| ||||| |||||||| |||||||| || || || | Sbjct 705819 TCAGCCAGAATATGGCAGCAAAGCTACCAGAGAAGAAAATCCCTTCTACAGCAGCGAAAG 705878 Query 24277 CAATAAGTCTTTCTCCATAACCGGCG-CT--GTCATGTATCCACTTTTGAGCCCAATCGG 24333 | |||| ||| || || | ||| || ||| ||||| || |||||||| | Sbjct 705879 CTATAACTCTCTCAGCAAAGTCGGAATCTTGGTCCCCAATCCAGTTGATGGCCCAATCAG 705938 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376 |||||||||| ||||| ||||| ||||| || ||||| || || Sbjct 705939 CCTTCTTTTTGACACATGGCATGGTCTCAATGGCATTGAACAG 705981 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 || || ||||| || ||||| |||||||| ||||| || || | |||||| || ||| Sbjct 707527 AAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAATGCAAGTACATGCGAGATGAAA 707586 Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 24638 | |||||| || | || || | ||| | || || ||||| || | ||| ||||| Sbjct 707587 TGTTTTTCATCGTCCTTCAGGTTCTCCCAGTGGTTCATGTCTTTGGACAGATCTACTTCC 707646 Query 24639 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 24698 || | ||||| || || || ||||||||||| ||||| ||||| ||||| || || | Sbjct 707647 TCAGCAGTCCAGAAGGAGGCTTCTGCCTTTTTGTACATCTTCCAAATGTCGTGGTACTTG 707706 Query 24699 ATTGGAAAAATAACAAATCTATTTGGATT 24727 || ||||| | |||||| | | |||||| Sbjct 707707 ATGGGAAATACAACAAAGCGACGTGGATT 707735 >seq3345 Length=2905891 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 |||||||| ||| ||||| | | | | || ||||| || | |||||||| | || Sbjct 2713820 TTCAAACTTGTCCCCCCAGCAGTCGGCGAGCCCTGGACACTCTGCGGGACACATGAGCGT 2713879 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| ||| | | | || |||| |||||||| || || || ||||| || || ||| Sbjct 2713880 CCAGTCTTCATTGTTCTCTACTCTCTTCATAAATAGGTCGGGGATCCACAGTGCGTAAAA 2713939 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 ||| || | | |||| ||||| ||||| ||||| |||||| || | || | | Sbjct 2713940 TAGGTCACGAGCCCTATTCTCCTCCTTTCCCGTATTTTTTTTACAGTCCAAAAAGTCGAA 2713999 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGG 54161 |||||| ||||||| ||||||||||| |||| Sbjct 2714000 CATATCACAATGCCATGGTTCCAAGTAAATGG 2714031 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| |||| || |||||||| || |||||| || | || ||||| || ||||| | Sbjct 2706044 TCCAGGCGTAGAAGTGCATACTGGTGAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 2706103 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||||| ||| || ||||| |||||||||||||| | ||| || || || |||| Sbjct 2706104 TGAGTGATTGCGATTGGTCAATGAATGCTCCCCTGTCTGCGGACATCTTGATTATAGTCT 2706163 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 53043 |||| | || ||||||| || || || |||| | || || || ||||| Sbjct 2706164 TTTGCGAGATCTCCCAAACTGTCTTGTACAACT-GTTTGATTTCATCTGG 2706212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593108151999840