Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3918 120 4e-22 seq3345 96.9 4e-15 >seq3918 Length=790838 Score = 120 bits (132), Expect = 4e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 || || ||||| || |||||||||||||| ||||| || || | |||||| || ||| Sbjct 707527 AAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAATGCAAGTACATGCGAGATGAAA 707586 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 34085 | |||||| || | || || | ||| | || || ||||| || | ||| ||||| Sbjct 707587 TGTTTTTCATCGTCCTTCAGGTTCTCCCAGTGGTTCATGTCTTTGGACAGATCTACTTCC 707646 Query 34086 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGG 34145 || | ||||| || || || ||||||||||| ||||| ||||| ||||| || || | | Sbjct 707647 TCAGCAGTCCAGAAGGAGGCTTCTGCCTTTTTGTACATCTTCCAAATGTCGTGGTACTTG 707706 Query 34146 ATTGGGAAAATAACAAATCTATTTGGATT 34174 || || || | |||||| | | |||||| Sbjct 707707 ATGGGAAATACAACAAAGCGACGTGGATT 707735 Score = 113 bits (124), Expect = 6e-20 Identities = 160/223 (72%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || || || ||||| ||||| || || || || ||||| | || | ||| | Sbjct 705759 CCTCATCCCTGCTTATTAACTCGTTGCTGAATGTAAGACCAGGCATAATTCCCCTCTTCT 705818 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||||| ||| || || || ||||| || |||||||| ||||| || | Sbjct 705819 TCAGCCAGAATATGGCAGCAAAGCTACCAGAGAAGAAAATCCCTTCTACAGCAGCGAAAG 705878 Query 33724 CAATAAGTCTCTCTCCATAACCGGCG-CT--GTCATGTATCCACTTTTGAGCCCAATCGG 33780 | |||| |||||| || | ||| || ||| ||||| || |||||||| | Sbjct 705879 CTATAACTCTCTCAGCAAAGTCGGAATCTTGGTCCCCAATCCAGTTGATGGCCCAATCAG 705938 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 |||||||||| ||||| ||||| || || |||||||| || || Sbjct 705939 CCTTCTTTTTGACACATGGCATGGTCTCAATGGCATTGAACAG 705981 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 |||||||||||| || |||||||| || || ||||| || || ||||| || |||||||| Sbjct 704803 CATAACTCCCATCTTCTGGTATTCTCCAACTCGTTTCTCAAAGAAATTGGTCTTTCCTTC 704862 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTA 33382 |||||| || | ||||| || ||||| || || ||| ||||| Sbjct 704863 CAATGAGATCTGCTCCATAAAGTCAAATGGGTTTTCAACGTTGTA 704907 >seq3345 Length=2905891 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| |||| || |||||||| || |||||| || | || ||||| || ||||| | Sbjct 2706044 TCCAGGCGTAGAAGTGCATACTGGTGAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 2706103 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | ||||| ||| || ||||| |||||||||||||| | ||| || || || |||| Sbjct 2706104 TGAGTGATTGCGATTGGTCAATGAATGCTCCCCTGTCTGCGGACATCTTGATTATAGTCT 2706163 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 62281 |||| | || ||||||| || || || |||| | || || || ||||| Sbjct 2706164 TTTGCGAGATCTCCCAAACTGTCTTGTACAACT-GTTTGATTTCATCTGG 2706212 Score = 93.3 bits (102), Expect = 5e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 ||||| || | |||||||| | || ||| ||| | | | || |||| |||||||| Sbjct 2713854 GGACACTCTGCGGGACACATGAGCGTCCAGTCTTCATTGTTCTCTACTCTCTTCATAAAT 2713913 Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341 || || || ||||| || || |||||| || | | |||| ||||| ||||| ||| Sbjct 2713914 AGGTCGGGGATCCACAGTGCGTAAAATAGGTCACGAGCCCTATTCTCCTCCTTTCCCGTA 2713973 Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 || |||||| || | || | | |||||| ||||||| ||||||||||| ||||| Sbjct 2713974 TTTTTTTTACAGTCCAAAAAGTCGAACATATCACAATGCCATGGTTCCAAGTAAATGGC 2714032 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| || | |||||| ||||||||||| ||||| || | || ||||| || || || Sbjct 2721070 CACTGAAGACTTTTTTGGTTTCCTTGTGGAGATTGGACACTGCAATTCTTGCCGCCAGCT 2721129 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 |||||||| ||||||| || || |||||||| | ||||||||||| |||||| Sbjct 2721130 GAGCATAATCAGGATGTTTGGTGGTCATGGTGGCTGCAGTCTCGGCTGCCAGGTTGTCCA 2721189 Query 64126 ATTCTACCGTTGTTACTCCA 64145 || || || || || ||| Sbjct 2721190 GCTCGACAGTGGTGACGCCA 2721209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629166856710240