Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3918 125 9e-24 seq3345 96.9 5e-15 >seq3918 Length=790838 Score = 125 bits (138), Expect = 9e-24 Identities = 163/223 (73%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| || || || ||||| |||||| || || || || ||||| | || | ||| | Sbjct 705759 CCTCATCCCTGCTTATTAACTCGTTGCTGAATGTAAGACCAGGCATAATTCCCCTCTTCT 705818 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||||| ||||| ||||| |||||||| |||||||| || || || | Sbjct 705819 TCAGCCAGAATATGGCAGCAAAGCTACCAGAGAAGAAAATCCCTTCTACAGCAGCGAAAG 705878 Query 36300 CAATAAGTCTCTCTCCATAACCGGCA-CT--GTCATGTATCCACTTTTGAGCCCAATCGG 36356 | |||| |||||| || | ||| | || ||| ||||| || |||||||| | Sbjct 705879 CTATAACTCTCTCAGCAAAGTCGGAATCTTGGTCCCCAATCCAGTTGATGGCCCAATCAG 705938 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399 |||||||||| ||||| ||||| ||||| || ||||| || || Sbjct 705939 CCTTCTTTTTGACACATGGCATGGTCTCAATGGCATTGAACAG 705981 Score = 107 bits (118), Expect = 3e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 36542 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 36601 || || ||||| || ||||| |||||||| ||||| || || | |||||| || ||| Sbjct 707527 AAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAATGCAAGTACATGCGAGATGAAA 707586 Query 36602 TATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 36661 | |||||| | | || || | ||| | || || ||||| || | ||| ||||| Sbjct 707587 TGTTTTTCATCGTCCTTCAGGTTCTCCCAGTGGTTCATGTCTTTGGACAGATCTACTTCC 707646 Query 36662 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 36721 || | ||||| || || || ||||||||||| ||||| ||||| ||||| || || | Sbjct 707647 TCAGCAGTCCAGAAGGAGGCTTCTGCCTTTTTGTACATCTTCCAAATGTCGTGGTACTTG 707706 Query 36722 ATTGGAAAAATAACAAA 36738 || ||||| | |||||| Sbjct 707707 ATGGGAAATACAACAAA 707723 >seq3345 Length=2905891 Score = 96.9 bits (106), Expect = 5e-15 Identities = 125/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| |||| || |||||||| || |||||| || | || ||||| || ||||| | Sbjct 2706044 TCCAGGCGTAGAAGTGCATACTGGTGAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 2706103 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | ||||| ||| || ||||| |||||||||||||| | ||| || || || |||| Sbjct 2706104 TGAGTGATTGCGATTGGTCAATGAATGCTCCCCTGTCTGCGGACATCTTGATTATAGTCT 2706163 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 65074 |||| | || ||||||| || || || |||| | || || || ||||| Sbjct 2706164 TTTGCGAGATCTCCCAAACTGTCTTGTACAACT-GTTTGATTTCATCTGG 2706212 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 ||| |||| ||| ||||| | | | | || ||||| || | |||||||| | || Sbjct 2713820 TTCAAACTTGTCCCCCCAGCAGTCGGCGAGCCCTGGACACTCTGCGGGACACATGAGCGT 2713879 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||| ||| | | | || |||| |||||||| || || || ||||| || || ||| Sbjct 2713880 CCAGTCTTCATTGTTCTCTACTCTCTTCATAAATAGGTCGGGGATCCACAGTGCGTAAAA 2713939 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 || || | | |||| ||||| ||||| ||||| |||||| || | || | | Sbjct 2713940 TAGGTCACGAGCCCTATTCTCCTCCTTTCCCGTATTTTTTTTACAGTCCAAAAAGTCGAA 2713999 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGC 66193 |||||| ||||||| ||||||||||| ||||| Sbjct 2714000 CATATCACAATGCCATGGTTCCAAGTAAATGGC 2714032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657492759408720