Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3918 125 1e-23 seq3345 118 2e-21 >seq3918 Length=790838 Score = 125 bits (138), Expect = 1e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 50344 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 50403 || || ||||| || ||||| |||||||| ||||| || || | |||||| || ||| Sbjct 707527 AAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAATGCAAGTACATGCGAGATGAAA 707586 Query 50404 TGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCT 50463 |||||||| | | | || || | ||| | || || ||||| || | ||||||||| Sbjct 707587 TGTTTTTCATCGTCCTTCAGGTTCTCCCAGTGGTTCATGTCTTTGGACAGATCTACTTCC 707646 Query 50464 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGG 50523 || | ||||| || || || ||||||||||| ||||| ||||| ||||| || || | | Sbjct 707647 TCAGCAGTCCAGAAGGAGGCTTCTGCCTTTTTGTACATCTTCCAAATGTCGTGGTACTTG 707706 Query 50524 ATTGGGAAAATAACAAATCTATTTGGATT 50552 || || || | |||||| | | |||||| Sbjct 707707 ATGGGAAATACAACAAAGCGACGTGGATT 707735 Score = 104 bits (114), Expect = 3e-17 Identities = 158/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || || || |||| |||||| || || || || ||||| | || | ||| | Sbjct 705759 CCTCATCCCTGCTTATTAACTCGTTGCTGAATGTAAGACCAGGCATAATTCCCCTCTTCT 705818 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||||| ||||| ||||| ||||| || |||||||| || || || | Sbjct 705819 TCAGCCAGAATATGGCAGCAAAGCTACCAGAGAAGAAAATCCCTTCTACAGCAGCGAAAG 705878 Query 50102 CAACAAGTCTCTCTCCATAACTGGCG-CT--GTCATGTATCCACTTTTGAGCCCAATCGG 50158 | | || |||||| || | || || ||| ||||| || |||||||| | Sbjct 705879 CTATAACTCTCTCAGCAAAGTCGGAATCTTGGTCCCCAATCCAGTTGATGGCCCAATCAG 705938 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 |||||||||| ||||| ||||| || || |||||||| || || Sbjct 705939 CCTTCTTTTTGACACATGGCATGGTCTCAATGGCATTGAACAG 705981 Score = 87.8 bits (96), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 |||||||||||| || |||||||| || || ||||| || || ||||| || |||||||| Sbjct 704803 CATAACTCCCATCTTCTGGTATTCTCCAACTCGTTTCTCAAAGAAATTGGTCTTTCCTTC 704862 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATT 49748 |||||| || | ||||| || ||||| || || Sbjct 704863 CAATGAGATCTGCTCCATAAAGTCAAATGGGTT 704895 >seq3345 Length=2905891 Score = 118 bits (130), Expect = 2e-21 Identities = 168/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||| |||| ||| ||||| ||| | | || ||||| || | |||||||| | || Sbjct 2713820 TTCAAACTTGTCCCCCCAGCAGTCGGCGAGCCCTGGACACTCTGCGGGACACATGAGCGT 2713879 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979 ||| ||| ||| | || ||||| |||||||| || || || ||||| || || ||| Sbjct 2713880 CCAGTCTTCATTGTTCTCTACTCTCTTCATAAATAGGTCGGGGATCCACAGTGCGTAAAA 2713939 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 ||| || | | |||| |||||| ||||| ||||| |||||| || | || | | Sbjct 2713940 TAGGTCACGAGCCCTATTCTCCTCCTTTCCCGTATTTTTTTTACAGTCCAAAAAGTCGAA 2713999 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTT 80094 |||||| ||||||| ||||||||||| ||||| | |||| |||| | ||||| Sbjct 2714000 CATATCACAATGCCATGGTTCCAAGTAAATGGCAAAGGCTCCTGGTC-TCTGTTT 2714053 Score = 102 bits (112), Expect = 1e-16 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| ||||||| |||||||| || |||||| || | || ||||| || ||||| | Sbjct 2706044 TCCAGGCGTAGAAGTGCATACTGGTGAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 2706103 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | ||||| ||| || ||||| |||||||||||||| | ||| || || || |||| Sbjct 2706104 TGAGTGATTGCGATTGGTCAATGAATGCTCCCCTGTCTGCGGACATCTTGATTATAGTCT 2706163 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 78953 |||| | || ||||||| || || || |||| | || || || ||||| Sbjct 2706164 TTTGCGAGATCTCCCAAACTGTCTTGTACAACT-GTTTGATTTCATCTGG 2706212 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | |||||| ||||||||||| ||||| || || || ||||| || || | Sbjct 2721070 CACTGAAGACTTTTTTGGTTTCCTTGTGGAGATTGGACACTGCAATTCTTGCCGCCAGCT 2721129 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 |||||||| ||||||| || || |||||||| | ||||||||||| |||||| Sbjct 2721130 GAGCATAATCAGGATGTTTGGTGGTCATGGTGGCTGCAGTCTCGGCTGCCAGGTTGTCCA 2721189 Query 80798 ATTCTACCGTTGTTACTCCA 80817 || || || || || ||| Sbjct 2721190 GCTCGACAGTGGTGACGCCA 2721209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717526666719120