Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq4225 109 6e-19 seq53685 95.1 1e-14 seq5158 89.7 5e-13 >seq4225 Length=872099 Score = 109 bits (120), Expect = 6e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | |||||| || ||||| | ||| || || || || |||||||| ||| | Sbjct 364463 CCTCCTCGGAGACGCAACACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAC 364522 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || | ||||| || |||||||||||| |||| ||||| ||||| || || || Sbjct 364523 AATGTACGTCCA-TCTTCCAGCTGTTTACCAGCAAAGATGAGACGCTGCTGGTCTGGGGG 364581 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || ||| | | || | |||| | || || || Sbjct 364582 AATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCAATGCTGTCTGATGGCTCAAC 364641 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | || | ||||| |||||||| || || || || || |||||| || Sbjct 364642 CTCCAGTGTGATGGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCATACCT 364693 >seq53685 Length=437 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||||||| | || | ||| | |||||||| ||||| ||||||||||| Sbjct 198 CCACCACGTAAACGAAGGACAAGATGTAAAGTAGATTCCTTTTGGATGTTGTAATCAGAA 257 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | ||| |||||||| | || |||||||| || || || || Sbjct 258 AGGGTACGACCATCTTCTAATTGCTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGG 317 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || |||||| ||| | | ||| | ||||| | || ||| || Sbjct 318 ATACCTTCCTTATCTTGAATTTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAACC 377 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| || || | ||||| || || |||||||| Sbjct 378 TCAAGGGTAATGGTCTTACCCGTAAGGGTTTTGACAAAGATTTGCAT 424 >seq5158 Length=501596 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||| | ||| || || || || |||||||| || | ||||| ||||| || || Sbjct 429130 ATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTGCGGCCATCTTCCAGCTG 429189 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 |||||||||| |||| ||||| ||||| || || || || ||||||||||| ||||| Sbjct 429190 TTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATTTT 429249 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 || | | ||| | | ||| | ||||| || |||| || | || || || || Sbjct 429250 AGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGGGTGATGGTTTTCCCTGT 429309 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 | |||||||| || |||||||| Sbjct 429310 GAGGGTTTTTACAAAGATTTGCAT 429333 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||| | ||| || || || || |||||||| || | ||||| ||||| || || Sbjct 429358 ATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCCAGCTG 429417 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 |||||||||| |||| ||||| ||||| || || || || ||||||||||| ||||| Sbjct 429418 TTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATTTT 429477 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 || | | ||| | | ||| | ||||| || |||| || | || || || || Sbjct 429478 AGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGGGTGATGGTTTTCCCTGT 429537 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 | |||||||| || |||||||| Sbjct 429538 GAGGGTTTTTACAAAGATTTGCAT 429561 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||| | ||| || || || || |||||||| || | ||||| ||||| || || Sbjct 429586 ATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCCAGCTG 429645 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 |||||||||| |||| ||||| ||||| || || || || ||||||||||| ||||| Sbjct 429646 TTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATTTT 429705 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 || | | ||| | | ||| | ||||| || |||| || | || || || || Sbjct 429706 AGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGGGTGATGGTTTTCCCTGT 429765 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 | |||||||| || |||||||| Sbjct 429766 GAGGGTTTTTACAAAGATTTGCAT 429789 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||| | ||| || || || || |||||||| || | ||||| ||||| || || Sbjct 429814 ATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCCAGCTG 429873 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 |||||||||| |||| ||||| ||||| || || || || ||||||||||| ||||| Sbjct 429874 TTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATTTT 429933 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 || | | ||| | | ||| | ||||| || |||| || | || || || || Sbjct 429934 AGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGGGTGATGGTTTTCCCTGT 429993 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 | |||||||| || |||||||| Sbjct 429994 GAGGGTTTTTACAAAGATTTGCAT 430017 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||| | ||| || || || || |||||||| || | ||||| ||||| || || Sbjct 430042 ATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCCAGCTG 430101 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 |||||||||| |||| ||||| ||||| || || || || ||||||||||| ||||| Sbjct 430102 TTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATTTT 430161 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 || | | ||| | | ||| | ||||| || |||| || | || || || || Sbjct 430162 AGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGGGTGATGGTTTTCCCTGT 430221 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 | |||||||| || |||||||| Sbjct 430222 GAGGGTTTTTACAAAGATTTGCAT 430245 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||| | ||| || || || || |||||||| || | ||||| ||||| || || Sbjct 430270 ATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCCAGCTG 430329 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 ||||||||| |||| ||||| ||||| || || || || ||||||||||| ||||| Sbjct 430330 CTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATTTT 430389 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 |||| | ||| | | ||| | ||||| || |||| || | || || || || Sbjct 430390 AGCCTTTACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGGGTGATAGTTTTTCCTGT 430449 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 | |||||||| || || ||||| Sbjct 430450 GAGGGTTTTTACAAAGATCTGCAT 430473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506490540046560