Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq53685 111 1e-19 seq48397 111 1e-19 seq48117 109 4e-19 seq5158 95.1 9e-15 seq4225 82.4 6e-11 >seq53685 Length=437 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || || ||||| ||||||||||| || | | | ||||||||||| || ||| Sbjct 228 GTAGATTCCTTTTGGATGTTGTAATCAGAAAGGGTACGACCATCTTCTAATTGCTTACCA 287 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCTCTT 15285 ||| | || | |||||||||||| ||| || ||||| || || |||||| ||| || Sbjct 288 GCGAAAATAAGACGTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGAATTTTAGCT-TT 346 Query 15286 TACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGT 15345 ||| |||| || || ||| ||| || || | ||||||||| ||||| || || || Sbjct 347 GACATTTTCAATAGTGTCGGAGGATTCAACCTCAAGGGTAATGGTCTTACCCGTAAGGGT 406 Query 15346 TTTTACAAAAATTTGCAT 15363 ||| ||||| |||||||| Sbjct 407 TTTGACAAAGATTTGCAT 424 >seq48397 Length=377 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || ||||| |||||||| || || |||| | |||||||||||| Sbjct 146 TGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGGGTTCTGTCATCTTCTAATTGT 205 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | || |||||||||||||| |||||| ||||| || || ||| ||| Sbjct 206 TTACCGGCGAAAATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTTTCTTGAATCTTG 265 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||| ||| | | || | ||| | || || || | ||| || || || || || Sbjct 266 TTCTTAACATTGACAATACTGTCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTA 325 Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366 || ||||| || ||||||||||| || Sbjct 326 AGGGTTTTGACGAAAATTTGCATCTT 351 >seq48117 Length=374 Score = 109 bits (120), Expect = 4e-19 Identities = 157/220 (71%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| |||||||| || ||||| |||||||| || ||| | | | ||||| Sbjct 139 AACAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGGTCATCTTC 198 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||| || |||||| | || ||||||||||| || |||||| ||||| || || Sbjct 199 TAATTGCTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTTTCTTG 258 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| ||| | | ||| ||||| | ||| || || | ||| || || || Sbjct 259 GATCTTTTGCTTAACATTAACAATGCTATCGGAAGATTCAACCTCAAGGGTTATAGTCTT 318 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 || || || || ||||||||||| ||||| | ||| ||| Sbjct 319 TCCGGTAAGGGTCTTTACAAAAATCTGCAT-TATGATAAT 357 >seq5158 Length=501596 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || |||| || | || | ||| || ||||| || || || |||||||| || Sbjct 429107 CCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAG 429166 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | ||||| ||||| | || | ||| || ||||| ||| Sbjct 429167 AGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 429226 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| ||||| ||| ||| |||| || | || ||| || Sbjct 429227 ATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACC 429286 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| |||||||| ||||| || ||||||||||| |||||||| Sbjct 429287 TCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 429333 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || |||| || | || | ||| || ||||| || || || |||||||| || Sbjct 429335 CCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAA 429394 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | ||||| ||||| | || | ||| || ||||| ||| Sbjct 429395 AGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 429454 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| ||||| ||| ||| |||| || | || ||| || Sbjct 429455 ATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACC 429514 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| |||||||| ||||| || ||||||||||| |||||||| Sbjct 429515 TCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 429561 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || |||| || | || | ||| || ||||| || || || |||||||| || Sbjct 429563 CCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAA 429622 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | ||||| ||||| | || | ||| || ||||| ||| Sbjct 429623 AGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 429682 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| ||||| ||| ||| |||| || | || ||| || Sbjct 429683 ATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACC 429742 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| |||||||| ||||| || ||||||||||| |||||||| Sbjct 429743 TCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 429789 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || |||| || | || | ||| || ||||| || || || |||||||| || Sbjct 429791 CCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAA 429850 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | ||||| ||||| | || | ||| || ||||| ||| Sbjct 429851 AGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 429910 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| ||||| ||| ||| |||| || | || ||| || Sbjct 429911 ATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACC 429970 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| |||||||| ||||| || ||||||||||| |||||||| Sbjct 429971 TCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 430017 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || |||| || | || | ||| || ||||| || || || |||||||| || Sbjct 430019 CCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAA 430078 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | ||||| ||||| | || | ||| || ||||| ||| Sbjct 430079 AGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 430138 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| ||||| ||| ||| |||| || | || ||| || Sbjct 430139 ATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACC 430198 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| |||||||| ||||| || ||||||||||| |||||||| Sbjct 430199 TCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 430245 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || |||| || | || | ||| || ||||| || || || |||||||| || Sbjct 430247 CCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAA 430306 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | || || ||||| | || | ||| || ||||| ||| Sbjct 430307 AGTGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 430366 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| ||||| ||||||| |||| || | || ||| || Sbjct 430367 ATTCCTTCTTTGTCCTGGATTTTAGCCTTTACATTTTCAATAGAGTCTGATGGTTCAACC 430426 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| || ||||| ||||| || ||||||||||| || ||||| Sbjct 430427 TCAAGGGTGATAGTTTTTCCTGTGAGGGTTTTTACAAAGATCTGCAT 430473 >seq4225 Length=872099 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/229 (69%), Gaps = 8/229 (3%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || || ||||| || ||||| || || || |||||||| ||| | ||| || | | Sbjct 368126 AACACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGG--ACAATGTACGTCCAT 368183 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| | ||||| || || | || | ||| || ||||| ||||| ||||| |||| Sbjct 368184 CTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATCCCTTCCTTGT 368243 Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTT-TCTACATCTAAGGTAATG 15328 | || ||| || ||| | || ||| | || | || || || || || || ||| Sbjct 368244 CCTGGATCTTGGCTTTGACATTCTCAATGCTGTC-CGATGGCTCCACCTCCAATGTGATG 368302 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAA 15377 |||||||| |||| ||| || ||||| |||||| || |||||||| || Sbjct 368303 GTTTTACCAGTCAAAGTCTTGACAAAGATTTGC--ATCTGAAAATACAA 368349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361814342711178