Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5158 149 1e-30 >seq5158 Length=501596 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||||| ||||| | ||| || || ||||| || || |||||| Sbjct 430244 ATCCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCA 430303 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || || | ||| || || || Sbjct 430304 GAAAGTGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCTGGG 430363 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| ||||| || || || ||||||||||| | | || ||||| Sbjct 430364 GGAATTCCTTCTTTGTCCTGGATTTTAGCCTTTACATTTTCAATAGAGTCTGATGGTTCA 430423 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || ||||| || || || || ||||||||||| |||||||| Sbjct 430424 ACCTCAAGGGTGATAGTTTTTCCTGTGAGGGTTTTTACAAAGATCTGCAT 430473 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| || || || | ||||| ||||| | ||| || || ||||| || || |||||||| Sbjct 429106 TCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGA 429165 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || || | || ||||| || ||||| |||||||| || || | ||| || || || || Sbjct 429166 GAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGG 429225 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 ||||||||||| ||||| || || || || |||||||| | | || ||||| || Sbjct 429226 AATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAAC 429285 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || || || || ||||||||||| || ||||| Sbjct 429286 CTCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 429333 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||||| ||||| | ||| || || ||||| || || |||||| Sbjct 429332 ATCCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCA 429391 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || ||||| |||||||| || || | ||| || || || Sbjct 429392 GAAAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGG 429451 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| ||||| || || || || |||||||| | | || ||||| Sbjct 429452 GGAATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCA 429511 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || || || || || ||||||||||| || ||||| Sbjct 429512 ACCTCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 429561 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||||| ||||| | ||| || || ||||| || || |||||| Sbjct 429560 ATCCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCA 429619 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || ||||| |||||||| || || | ||| || || || Sbjct 429620 GAAAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGG 429679 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| ||||| || || || || |||||||| | | || ||||| Sbjct 429680 GGAATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCA 429739 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || || || || || ||||||||||| || ||||| Sbjct 429740 ACCTCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 429789 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||||| ||||| | ||| || || ||||| || || |||||| Sbjct 429788 ATCCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCA 429847 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || ||||| |||||||| || || | ||| || || || Sbjct 429848 GAAAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGG 429907 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| ||||| || || || || |||||||| | | || ||||| Sbjct 429908 GGAATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCA 429967 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || || || || || ||||||||||| || ||||| Sbjct 429968 ACCTCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 430017 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||||| ||||| | ||| || || ||||| || || |||||| Sbjct 430016 ATCCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCA 430075 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || ||||| |||||||| || || | ||| || || || Sbjct 430076 GAAAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGG 430135 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| ||||| || || || || |||||||| | | || ||||| Sbjct 430136 GGAATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCA 430195 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || || || || || ||||||||||| || ||||| Sbjct 430196 ACCTCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 430245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150179005047864