Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4225 102 7e-17 seq48117 93.3 4e-14 >seq4225 Length=872099 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | | ||||| ||||| |||||| |||||| || |||||||| || | Sbjct 368110 ACCTCCTCGGAGACGCAACACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGA 368169 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 |||| || | || |||||||| |||||| | | || | ||||||||| || || Sbjct 368170 CAATGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGGTCTGGGGG 368229 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| || || |||| | | | ||| | || | | |||| Sbjct 368230 AATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCAATGCTGTCCGATGGCTCCAC 368289 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | ||| ||||||||||| || | ||| || ||||| || |||||| Sbjct 368290 CTCCAATGTGATGGTTTTACCAGTCAAAGTCTTGACAAAGATTTGCATC 368338 >seq48117 Length=374 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 ||| || ||| |||||||| |||||||| |||| || || || || || || | | Sbjct 145 ATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGA-AAGAGTACGGTCATCTTCTAATT 203 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 ||||||| || |||||||||| || ||||| || | || |||||| || || | Sbjct 204 GCTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTTTCTTGGATCT 263 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | | | ||| |||||| ||| || ||| | ||||| || || |||| Sbjct 264 TTTGCTTAACATTAACAATGCTATCGGAAGATTCAACCTCAAGGGTTATAGTCTTTCCGG 323 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || |||||||||||||| Sbjct 324 TAAGGGTCTTTACAAAAATCTGCAT 348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420826833910658