Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1128 89.7 3e-13 seq506 87.8 9e-13 seq459 87.8 9e-13 seq3142 84.2 1e-11 seq1496 84.2 1e-11 seq2015 82.4 4e-11 >seq1128 Length=856975 Score = 89.7 bits (98), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 11433 ATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 ||| ||| || |||||| | | ||||| || || ||||||| |||| |||||||| Sbjct 16359 ATAAAATAAAAAAAAAAAAATACTGGCCAGTGTGGGGGTCGAACCCACGACATTCGCGTT 16418 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||| ||| |||||||||| ||||| Sbjct 16419 ATTAGCACGACGCTCTAACCGACTGAGCTAACCGGCCG 16456 >seq506 Length=1099665 Score = 87.8 bits (96), Expect = 9e-13 Identities = 83/106 (78%), Gaps = 3/106 (3%) Strand=Plus/Minus Query 11430 AATATAGAATTAATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 || ||| | | || | ||||||||| ||||| || || ||||||| |||| || Sbjct 161097 AAAATAAAGTGAAAACAAAATCAAAACACTGGCCAGTGTGGGGGTCGAACCCACGACATT 161038 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||||||||||||||||| ||| |||||||||| ||||||| Sbjct 161037 CGCGTTATTAGCACGACGCTCTAACCGACTGAGCTAACCGGCCGTC 160992 >seq459 Length=1653673 Score = 87.8 bits (96), Expect = 9e-13 Identities = 72/87 (83%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||||| || ||||| || || ||||||| |||| |||||||||||||||||| Sbjct 1645154 AAAAAATCAGATCTGGCCAGTGTGGGGGTCGAACCCACGACATTCGCGTTATTAGCACGA 1645095 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||| |||||||||| |||| Sbjct 1645094 CGCTCTAACCGACTGAGCTAACCGGCC 1645068 Score = 84.2 bits (92), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||||| || ||||| || || ||||||| |||| |||||||||||||||||| Sbjct 1638230 AAAAAATCAGATCTGGCCAGTGTGGGGGTCGAACCCACGACATTCGCGTTATTAGCACGA 1638171 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||| |||||||||| |||| Sbjct 1638170 TGCTCTAACCGACTGAGCTAACCGGCC 1638144 Score = 84.2 bits (92), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||||| || ||||| || || ||||||| |||| |||||||||||||||||| Sbjct 1644728 AAAAAATCAGATCTGGCCAGTGTGGGGGTCGAACCCACGACATTCGCGTTATTAGCACGA 1644669 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||| |||||||||| |||| Sbjct 1644668 TGCTCTAACCGACTGAGCTAACCGGCC 1644642 Score = 82.4 bits (90), Expect = 4e-11 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| | ||||| || || ||||||| |||| ||||||||||||||||| Sbjct 1628217 ATAAAAAAAAGATATGGCCAGTGTGGGGGTCGAACCCACGACATTCGCGTTATTAGCACG 1628276 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||| ||| |||||||||| ||||| Sbjct 1628277 ACGCTCTAACCGACTGAGCTAACCGGCCG 1628305 >seq3142 Length=448735 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| |||| |||||||||||||||||||||||| ||| |||||||||| || Sbjct 30793 GGGTCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCGACTGAGCTAACCGG 30734 Query 11528 CCGTC 11532 ||||| Sbjct 30733 CCGTC 30729 Score = 84.2 bits (92), Expect = 1e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| | | ||||| || || ||||||| |||| |||||||||||||||||||| Sbjct 54111 AAAAATTATAATGGCCAGTGTGGGGGTCGAACCCACGACATTCGCGTTATTAGCACGACG 54052 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||| |||||||||| |||| Sbjct 54051 CTCTAACCGACTGAGCTAACCGGCC 54027 Score = 82.4 bits (90), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||||| | || |||| ||| || |||| || || ||||||| |||| |||| Sbjct 39611 AAATATATGAAGAAAAAAACATCTTAT-GGCCAGTGTGGGGGTCGAACCCACGACATTCG 39553 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||||||||||||||| ||| |||||||||| |||| || Sbjct 39552 CGTTATTAGCACGACGCTCTAACCGACTGAGCTAACCGGCCCTC 39509 >seq1496 Length=1145130 Score = 84.2 bits (92), Expect = 1e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || ||||| || || ||||||| |||| |||||||||||||||||||| Sbjct 835700 AAAAATGTAACTGGCCAGTGTGGGGGTCGAACCCACGACATTCGCGTTATTAGCACGACG 835759 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||| |||||||||| |||| Sbjct 835760 CTCTAACCGACTGAGCTAACCGGCC 835784 >seq2015 Length=2190197 Score = 82.4 bits (90), Expect = 4e-11 Identities = 70/86 (81%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| ||| ||| |||| || || ||||||| |||| ||||||||||||||||||| Sbjct 550926 AAAATATCTAAT-GGCCAGTGTGGGGGTCGAACCCACGACATTCGCGTTATTAGCACGAC 550984 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||| |||||||||| |||| Sbjct 550985 GCTCTAACCGACTGAGCTAACCGGCC 551010 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261227775236008