Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3918 120 4e-22 seq3345 96.9 4e-15 >seq3918 Length=790838 Score = 120 bits (132), Expect = 4e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||| || ||||| || ||||| |||||||| ||||| || || | |||||| || | Sbjct 707525 CCAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAATGCAAGTACATGCGAGATGA 707584 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTT 33805 ||| |||||| || | || || | ||| | || || ||||| || | |||||||| Sbjct 707585 AATGTTTTTCATCGTCCTTCAGGTTCTCCCAGTGGTTCATGTCTTTGGACAGATCTACTT 707644 Query 33806 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATT 33865 | || | ||||| || || || ||||||||||| ||||| ||||| ||||| | || | Sbjct 707645 CCTCAGCAGTCCAGAAGGAGGCTTCTGCCTTTTTGTACATCTTCCAAATGTCGTGGTACT 707704 Query 33866 GGATTGGGAAAATAACAAATCTATTTGGATT 33896 ||| || || | |||||| | | |||||| Sbjct 707705 TGATGGGAAATACAACAAAGCGACGTGGATT 707735 Score = 116 bits (128), Expect = 5e-21 Identities = 161/223 (72%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || || || |||| |||||| || || || || ||||| | || | ||| | Sbjct 705759 CCTCATCCCTGCTTATTAACTCGTTGCTGAATGTAAGACCAGGCATAATTCCCCTCTTCT 705818 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||||| ||| || ||||| ||||| || |||||||| ||||| || | Sbjct 705819 TCAGCCAGAATATGGCAGCAAAGCTACCAGAGAAGAAAATCCCTTCTACAGCAGCGAAAG 705878 Query 33446 CAATAAGTCTCTCTCCATAACCGGCG-CT--GTCATGTATCCACTTTTGAGCCCAATCGG 33502 | |||| |||||| || | ||| || ||| ||||| || |||||||| | Sbjct 705879 CTATAACTCTCTCAGCAAAGTCGGAATCTTGGTCCCCAATCCAGTTGATGGCCCAATCAG 705938 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33545 |||||||||| ||||| ||||| || || |||||||| || || Sbjct 705939 CCTTCTTTTTGACACATGGCATGGTCTCAATGGCATTGAACAG 705981 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 |||||||||||| || |||||||| || || ||||| || || ||||| || |||||||| Sbjct 704803 CATAACTCCCATCTTCTGGTATTCTCCAACTCGTTTCTCAAAGAAATTGGTCTTTCCTTC 704862 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATT 33092 |||||| || | ||||| || ||||| || || Sbjct 704863 CAATGAGATCTGCTCCATAAAGTCAAATGGGTT 704895 >seq3345 Length=2905891 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| |||| || |||||||| || |||||| || | || ||||| || ||||| | Sbjct 2706044 TCCAGGCGTAGAAGTGCATACTGGTGAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 2706103 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | ||||| ||| || ||||| |||||||||||||| | ||| || || || |||| Sbjct 2706104 TGAGTGATTGCGATTGGTCAATGAATGCTCCCCTGTCTGCGGACATCTTGATTATAGTCT 2706163 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 62230 |||| | || ||||||| || || || |||| | || || || ||||| Sbjct 2706164 TTTGCGAGATCTCCCAAACTGTCTTGTACAACT-GTTTGATTTCATCTGG 2706212 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 ||| |||| ||| ||||| | | | | || ||||| || | |||||||| | || Sbjct 2713820 TTCAAACTTGTCCCCCCAGCAGTCGGCGAGCCCTGGACACTCTGCGGGACACATGAGCGT 2713879 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 ||| ||| | | | || |||| |||||||| || || || ||||| || || ||| Sbjct 2713880 CCAGTCTTCATTGTTCTCTACTCTCTTCATAAATAGGTCGGGGATCCACAGTGCGTAAAA 2713939 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 ||| || | | |||| ||||| ||||| ||||| |||||| || | || | | Sbjct 2713940 TAGGTCACGAGCCCTATTCTCCTCCTTTCCCGTATTTTTTTTACAGTCCAAAAAGTCGAA 2713999 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGC 63349 |||||| ||||||| ||||||||||| ||||| Sbjct 2714000 CATATCACAATGCCATGGTTCCAAGTAAATGGC 2714032 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | |||||| ||||||||||| ||||| || || || ||||| || || || Sbjct 2721070 CACTGAAGACTTTTTTGGTTTCCTTGTGGAGATTGGACACTGCAATTCTTGCCGCCAGCT 2721129 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 |||||||| ||||||| || || |||||||| | ||||||||||| |||||| Sbjct 2721130 GAGCATAATCAGGATGTTTGGTGGTCATGGTGGCTGCAGTCTCGGCTGCCAGGTTGTCCA 2721189 Query 64075 ATTCTACCGTTGTTACTCCA 64094 || || || || || ||| Sbjct 2721190 GCTCGACAGTGGTGACGCCA 2721209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622303555379280