Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3345 98.7 3e-15 seq4646 84.2 6e-11 seq3918 84.2 6e-11 >seq3345 Length=2905891 Score = 98.7 bits (108), Expect = 3e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 ||||| || | || ||||| || || ||| || | |||| |||||||| || ||| Sbjct 2713193 GAGGGCAAAGGACGCAAGACCATAAAAGCTCAGCAGTTGTGGTACGCCATCATTGAGTCG 2713134 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 |||| || || || || || || ||||||||||| || || ||| | ||||| || Sbjct 2713133 CAGACAGAAACGGGCACCCCGTACATGTTGTACAAGGACAGTTGTAACAGGAAGTCGAAT 2713074 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 || ||| |||| || || || || |||||||| ||||| ||||| | || |||| | Sbjct 2713073 CAACAGAACCTCGGCACCATCAAGTGTAGCAACCTCTGTACGGAGATCGTGGAGTACAGC 2713014 Query 364264 GCTCCCGACGAG 364275 |||||||||| Sbjct 2713013 AGTCCCGACGAG 2713002 >seq4646 Length=416119 Score = 84.2 bits (92), Expect = 6e-11 Identities = 124/172 (72%), Gaps = 8/172 (5%) Strand=Plus/Plus Query 111488 AGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAAC 111547 ||||||||| || || || ||||| || |||||||| ||||| || || || ||||| Sbjct 306789 AGGTGATCTTGGTCCTGTGTACGGTTTCCAATGGCGACACTTCGGAGCTGAATACAAGGA 306848 Query 111548 CATGCACGACTCATATGATTC---ACAGGGAACTGATCAATTACAGA-ATGTCATTGATC 111603 |||||||| || | | | | |||| | || ||| | ||| ||||||||| | Sbjct 306849 CATGCACG---CAGACTACACCGGAAAGGGCATAGACCAACTG-AGAGATGTCATTGCTA 306904 Query 111604 AAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCC 111655 |||| ||||||||||||| | | | |||||||| ||| || ||||| || Sbjct 306905 AAATAAAGAACAACCCAAATGATAGGCGCATTATCATGTCCGCCTGGAATCC 306956 >seq3918 Length=790838 Score = 84.2 bits (92), Expect = 6e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 22846 TATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAAT 22905 || ||||| | || |||||||| | ||||| | || ||| | ||||||||||||||| Sbjct 704907 TACAACGTTGAAAACCCATTTGACTTTATGGAGCAGATCTCATTGGAAGGAAAGACCAAT 704848 Query 22906 TTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGATG 22954 ||||| || ||| ||||||| |||||||| || || |||||| ||| Sbjct 704847 TTCTTTGAGAAACGAGTTGGAGAATACCAGAAGATGGGAGTTATGAATG 704799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301973276038556