Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq5158 87.8 1e-12 >seq5158 Length=501596 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| | || | ||||| | ||| || ||||||||||| || ||||||||||| | Sbjct 429334 CCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGA 429393 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | || |||| ||||| || ||| | ||||| ||||| ||||| || Sbjct 429394 AAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGG 429453 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | || |||||||| |||| |||||| | | | || ||| || || Sbjct 429454 AATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAAC 429513 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||||||| || || || ||||| ||||| || ||||| Sbjct 429514 CTCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 429561 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| | || | ||||| | ||| || ||||||||||| || ||||||||||| | Sbjct 429562 CCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGA 429621 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | || |||| ||||| || ||| | ||||| ||||| ||||| || Sbjct 429622 AAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGG 429681 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | || |||||||| |||| |||||| | | | || ||| || || Sbjct 429682 AATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAAC 429741 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||||||| || || || ||||| ||||| || ||||| Sbjct 429742 CTCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 429789 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| | || | ||||| | ||| || ||||||||||| || ||||||||||| | Sbjct 429790 CCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGA 429849 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | || |||| ||||| || ||| | ||||| ||||| ||||| || Sbjct 429850 AAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGG 429909 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | || |||||||| |||| |||||| | | | || ||| || || Sbjct 429910 AATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAAC 429969 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||||||| || || || ||||| ||||| || ||||| Sbjct 429970 CTCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 430017 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| | || | ||||| | ||| || ||||||||||| || ||||||||||| | Sbjct 430018 CCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGA 430077 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | || |||| ||||| || ||| | ||||| ||||| ||||| || Sbjct 430078 AAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGG 430137 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | || |||||||| |||| |||||| | | | || ||| || || Sbjct 430138 AATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAAC 430197 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||||||| || || || ||||| ||||| || ||||| Sbjct 430198 CTCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 430245 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/236 (68%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 16703 ATTTAC---CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTG 16759 |||||| ||||| | || | ||||| | ||| || ||||||||||| || |||||| Sbjct 429098 ATTTACTGTCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTG 429157 Query 16760 TAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGG 16819 ||||| | | || | | || |||| ||||| || ||| | ||||| ||||| ||| Sbjct 429158 TAGTCAGAGAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGG 429217 Query 16820 TCCACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCG 16879 || || | || |||||||| |||| |||||| | | | || ||| Sbjct 429218 TCTGGGGGAATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGAT 429277 Query 16880 GGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || | |||||||||||| || || || ||||| ||||| || ||||| Sbjct 429278 GGTTCAACCTCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 429333 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| | || | ||||| | ||| || ||||||||||| || ||||||||||| | Sbjct 430246 CCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGA 430305 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | || |||| || || || ||| | ||||| ||||| ||||| || Sbjct 430306 AAGTGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGG 430365 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | || |||||||| |||| ||| || | | | || ||| || || Sbjct 430366 AATTCCTTCTTTGTCCTGGATTTTAGCCTTTACATTTTCAATAGAGTCTGATGGTTCAAC 430425 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| |||||||| || || ||||| ||||| |||||||| Sbjct 430426 CTCAAGGGTGATAGTTTTTCCTGTGAGGGTTTTTACAAAGATCTGCAT 430473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404679916627420