Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3918 122 1e-22 seq3345 100 4e-16 >seq3918 Length=790838 Score = 122 bits (134), Expect = 1e-22 Identities = 162/223 (73%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| || || || ||||| |||||| || || || || ||||| | || | ||| | Sbjct 705759 CCTCATCCCTGCTTATTAACTCGTTGCTGAATGTAAGACCAGGCATAATTCCCCTCTTCT 705818 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||||| ||||| ||||| |||||||| |||||||| || || || | Sbjct 705819 TCAGCCAGAATATGGCAGCAAAGCTACCAGAGAAGAAAATCCCTTCTACAGCAGCGAAAG 705878 Query 32803 CAATAAGTCTCTCTCCATAACCGGCG-CT--GTCATGTATCCACTTTTGAGCCCAATCGG 32859 | |||| |||||| || | ||| || ||| ||||| || |||||||| | Sbjct 705879 CTATAACTCTCTCAGCAAAGTCGGAATCTTGGTCCCCAATCCAGTTGATGGCCCAATCAG 705938 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 32902 |||||||||| ||||| ||||| ||||| || ||||| || || Sbjct 705939 CCTTCTTTTTGACACATGGCATGGTCTCAATGGCATTGAACAG 705981 Score = 116 bits (128), Expect = 5e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33045 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33104 || || ||||| || ||||| |||||||| ||||| || || | |||||| || ||| Sbjct 707527 AAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAATGCAAGTACATGCGAGATGAAA 707586 Query 33105 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 33164 | |||||| || | || || | ||| | || || ||||| || | ||| ||||| Sbjct 707587 TGTTTTTCATCGTCCTTCAGGTTCTCCCAGTGGTTCATGTCTTTGGACAGATCTACTTCC 707646 Query 33165 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 33224 || | ||||| || || || ||||||||||| ||||| ||||| ||||| || || | Sbjct 707647 TCAGCAGTCCAGAAGGAGGCTTCTGCCTTTTTGTACATCTTCCAAATGTCGTGGTACTTG 707706 Query 33225 ATTGGAAAAATAACAAATCTATTTGGATT 33253 || ||||| | |||||| | | |||||| Sbjct 707707 ATGGGAAATACAACAAAGCGACGTGGATT 707735 >seq3345 Length=2905891 Score = 100 bits (110), Expect = 4e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||| |||| ||| ||||| | | | || || ||||| || | |||||||| | || Sbjct 2713820 TTCAAACTTGTCCCCCCAGCAGTCGGCGAGCCCTGGACACTCTGCGGGACACATGAGCGT 2713879 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||| ||| | | | || |||| |||||||| || || || ||||| || || ||| Sbjct 2713880 CCAGTCTTCATTGTTCTCTACTCTCTTCATAAATAGGTCGGGGATCCACAGTGCGTAAAA 2713939 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 ||| || | | |||| ||||| ||||| ||||| |||||| || | || | | Sbjct 2713940 TAGGTCACGAGCCCTATTCTCCTCCTTTCCCGTATTTTTTTTACAGTCCAAAAAGTCGAA 2713999 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 |||||| ||||||| ||||||||||| ||||| Sbjct 2714000 CATATCACAATGCCATGGTTCCAAGTAAATGGC 2714032 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| |||| || |||||||| || |||||| || | || ||||| || ||||| | Sbjct 2706044 TCCAGGCGTAGAAGTGCATACTGGTGAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 2706103 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | ||||| ||| || ||||| |||||||||||||| | ||| || || || |||| Sbjct 2706104 TGAGTGATTGCGATTGGTCAATGAATGCTCCCCTGTCTGCGGACATCTTGATTATAGTCT 2706163 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 62085 |||| | || ||||||| || || || |||| | || || || ||||| Sbjct 2706164 TTTGCGAGATCTCCCAAACTGTCTTGTACAACT-GTTTGATTTCATCTGG 2706212 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | |||||| ||||| ||||| ||||| || || || ||||| || || || Sbjct 2721070 CACTGAAGACTTTTTTGGTTTCCTTGTGGAGATTGGACACTGCAATTCTTGCCGCCAGCT 2721129 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 |||||||| ||||||| || || |||||||| | ||||||||||| |||||| Sbjct 2721130 GAGCATAATCAGGATGTTTGGTGGTCATGGTGGCTGCAGTCTCGGCTGCCAGGTTGTCCA 2721189 Query 63930 ATTCTACCGTTGTTACACCA 63949 || || || || || ||| Sbjct 2721190 GCTCGACAGTGGTGACGCCA 2721209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632977315576800