Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3918 127 2e-24 >seq3918 Length=790838 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 93474 CTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTA 93533 |||| | || |||||||| || ||||| || ||||| || || | || |||| | Sbjct 707522 CTACCAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAATGCAAGTACATGCGAGA 707581 Query 93534 TAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGA 93593 | |||||||| ||||| || || || || ||||| | | | ||||| || ||||| | Sbjct 707582 TGAAATGTTTTTCATCGTCCTTCAGGTTCTCCCAGTGGTTCATGTCTTTGGACAGATCTA 707641 Query 93594 CTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGAT 93653 |||| || ||||||| || || |||||||| ||||||||||| | ||| ||||| || | Sbjct 707642 CTTCCTCAGCAGTCCAGAAGGAGGCTTCTGCCTTTTTGTACATCTTCCAAATGTCGTGGT 707701 Query 93654 ATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTCT 93706 | | || ||||||| ||||| ||| || || || || || | |||||| Sbjct 707702 ACTTGATGGGAAATACAACAAAGCGACGTGGATTGTCCTTCAGCAGTGGCTCT 707754 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 93127 TATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATAT 93186 ||| ||||| ||||||||||| | ||| || | | ||| | ||||| ||||| ||||| Sbjct 705772 TATTAACTCGTTGCTGAATGTAAGACCAGGCATAATTCCCCTCTTCTTCAGCCAGAATAT 705831 Query 93187 TGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 | |||||| |||||||| || || || ||||| || || || || || | || | || Sbjct 705832 GGCAGCAAAGCTACCAGAGAAGAAAATCCCTTCTACAGCAGCGAAAGCTATAACTCTCTC 705891 Query 93247 GGCAAAATTTGCGGAA--TTACT-GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||||| | ||||| || | | ||||| || | |||||||| || || || || Sbjct 705892 AGCAAAGT---CGGAATCTTGGTCCCCAATCCAGTTGATGGCCCAATCAGCCTTCTTTTT 705948 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 | ||| || | || || || || || || ||| | |||| Sbjct 705949 GACACATGGCATGGTCTCAATGGCATTGAACAGGAAGTCTC 705989 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 |||||||| ||||| | | | ||||||||||| || | |||||||| || |||||| Sbjct 706242 ATGTATGTGTCGATAAGTAAACTGTACATTTCAGAGTGAATGTTCTCCATAGCTATTTGG 706301 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 ||||||||||||||||| ||||| || || ||||||| |||||||| || Sbjct 706302 AATCCGTAGAAACATCTTGCTTCTGTTGCTTGAACTTCTTTGCTGAATCTCTCCAC 706357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556285437499920