Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq53685 154 1e-32 seq48117 141 8e-29 seq48397 131 1e-25 >seq53685 Length=437 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||||||||| ||||| ||||| | || ||||| || | || ||||| || ||| || Sbjct 426 AGATGCAAATCTTTGTCAAAACCCTTACGGGTAAGACCATTACCCTTGAGGTTGAATCCT 367 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 |||| || | || || ||||| ||||||||||| ||||| ||||| ||||| || | Sbjct 366 CCGACACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGTATCCCACCAGACC 307 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 ||||||||||||| || || || || || ||||| ||| || ||| | || ||||||| Sbjct 306 AACAACGTCTTATTTTCGCTGGTAAGCAATTAGAAGATGGTCGTACCCTTTCTGATTACA 247 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||| ||||| ||||| || ||||| | || | || || || || ||| Sbjct 246 ACATCCAAAAGGAATCTACTTTACATCTTGTCCTTCGTTTACGTGGTGGT 197 >seq48117 Length=374 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | ||||| || || | || ||||| || ||| | || Sbjct 348 ATGCAGATTTTTGTAAAGACCCTTACCGGAAAGACTATAACCCTTGAGGTTGAATCTTCC 289 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||| | | | || | || ||||| || ||||| ||||| ||||||||||| |||||| Sbjct 288 GATAGCATTGTTAATGTTAAGCAAAAGATCCAAGAAAAGGAAGGTATTCCACCAGATCAA 229 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || || || || ||||| ||| |||| || | || || |||||| Sbjct 228 CAACGTTTAATTTTCGCTGGTAAGCAATTAGAAGATGACCGTACTCTTTCTGACTACAAC 169 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||||||| | ||| | ||| | || | || || ||| Sbjct 168 ATCCAAAAGGAATCCACCCTCCATCTTGTTCTCCGTCTTCGTGGTGGT 121 >seq48397 Length=377 Score = 131 bits (144), Expect = 1e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||||||||| || ||||| | || || || || | || ||||| || || | Sbjct 351 AAGATGCAAATTTTCGTCAAAACCCTTACTGGAAAGACTATAACCCTTGAGGTTGAGTCT 292 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| | | | | || | || | || |||||||| ||||| ||||||||||| || Sbjct 291 TCCGACAGTATTGTCAATGTTAAGAACAAGATTCAAGAAAAGGAAGGTATTCCACCAGAC 232 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||||||| | || || ||||| ||||| ||||| ||| || | ||| | || || ||| Sbjct 231 CAACAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGACAGAACCCTTTCTGACTAC 172 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||||||||| ||||| || Sbjct 171 AACATTCAAAAGGAATCTAC 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419305168373770