Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4827 102 2e-16 seq76749 100 6e-16 seq4985 100 6e-16 seq2776 100 6e-16 seq981 100 6e-16 seq2932 98.7 2e-15 seq3085 86.0 1e-11 >seq4827 Length=2667754 Score = 102 bits (112), Expect = 2e-16 Identities = 70/78 (90%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 142499 AGATA-GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGT 142557 ||||| |||||| |||||||||||||||||| | ||||||||||||| | |||||||||| Sbjct 256114 AGATATGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGT 256173 Query 142558 TCGAGCCCCACATCGGGC 142575 ||||||||||| | |||| Sbjct 256174 TCGAGCCCCACGTTGGGC 256191 >seq76749 Length=1677611 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||| Sbjct 911550 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 911491 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 911490 CCCCACGTTGGGC 911478 >seq4985 Length=490927 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||| Sbjct 16142 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 16083 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 16082 CCCCACGTTGGGC 16070 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142510 TTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCACA 142569 ||||||||||||||||||| | ||||| ||||||| | |||||||||| ||||||||||| Sbjct 36342 TTAGCTCAGTCGGTAGAGCACGAGACTTTTAATCTCGGGGTCGTGGGTACGAGCCCCACA 36401 Query 142570 TCGGGC 142575 | |||| Sbjct 36402 TTGGGC 36407 >seq2776 Length=2105875 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||| Sbjct 2084563 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 2084504 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 2084503 CCCCACGTTGGGC 2084491 >seq981 Length=1734736 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||| Sbjct 802358 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 802417 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 802418 CCCCACGTTGGGC 802430 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||| Sbjct 808216 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 808157 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 808156 CCCCACGTTGGGC 808144 >seq2932 Length=486623 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 133299 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 133358 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 133359 CCCACGTTGGGC 133370 >seq3085 Length=974669 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||| |||||||||||||| | ||||||| ||||| | ||||| |||||||||| Sbjct 355857 GCCCGGCTAGTTCAGTCGGTAGAGCACGAGACTCTCAATCTCGGGGTCGGGGGTTCGAGC 355916 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 355917 CCCACGTTGGGC 355928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026748263655378