Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3345 86.0 1e-11 >seq3345 Length=2905891 Score = 86.0 bits (94), Expect = 1e-11 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||| ||||| |||||||| || | | ||| | |||||| || || ||||||| Sbjct 2709256 ACCTGGAACTCCCCCGACAGGACCCTCCTGGAGTATATATTGCTGGTGTACGCCTCGATG 2709315 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCG-ACACCAGCAG 244215 ||| |||| || || ||||| || ||| ||| ||||||||||||| ||| || || Sbjct 2709316 GACTCGTTGTTCCCAAGGATCTGGGCTGTGGACGCCGTCGGCATGGGCGCACA-CAAAAG 2709374 Query 244216 ACTGTTCCTCACGCCGTGCCTCTGGATG 244243 |||||||| ||| || || |||||||| Sbjct 2709375 ACTGTTCCGCACACCATG--TCTGGATG 2709400 Score = 84.2 bits (92), Expect = 4e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| || | || |||||| || ||||| || |||||||| || |||||||||||| Sbjct 2713000 ACCTCGTCGGGACTGCTGTACTCCACGATCTCCGTACAGAGGTTGCTACACTTGATGGTG 2713059 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 || |||| ||| ||||| ||||| ||| || ||||||||| | |||| Sbjct 2713060 CCGAGGTTCTGTTGATTCGACTTCCTGTTACAACTGTCCTTGTACAACATG 2713110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943363485130080