Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq4902 95.1 1e-14 seq1046 95.1 1e-14 seq890 95.1 1e-14 >seq4902 Length=494613 Score = 95.1 bits (104), Expect = 1e-14 Identities = 77/91 (85%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| ||||||||||| |||| |||||||||||| ||| ||||||||||||| Sbjct 480801 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATCGTACGATCTAAGGAACC 480860 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 480861 ATAACTGATTTAATGAGCCATTCGCGGTTTC 480891 Score = 95.1 bits (104), Expect = 1e-14 Identities = 77/91 (85%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| ||||||||||| |||| |||||||||||| ||| ||||||||||||| Sbjct 480801 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATCGTACGATCTAAGGAACC 480860 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 480861 ATAACTGATTTAATGAGCCATTCGCGGTTTC 480891 >seq1046 Length=1918858 Score = 95.1 bits (104), Expect = 1e-14 Identities = 77/91 (85%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| ||||||||||| |||| |||||||||||| ||| ||||||||||||| Sbjct 10350 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATCGTACGATCTAAGGAACC 10291 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 10290 ATAACTGATTTAATGAGCCATTCGCGGTTTC 10260 Score = 95.1 bits (104), Expect = 1e-14 Identities = 77/91 (85%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| ||||||||||| |||| |||||||||||| ||| ||||||||||||| Sbjct 10350 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATCGTACGATCTAAGGAACC 10291 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 10290 ATAACTGATTTAATGAGCCATTCGCGGTTTC 10260 >seq890 Length=1148126 Score = 95.1 bits (104), Expect = 1e-14 Identities = 77/91 (85%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| ||||||||||| |||| |||||||||||| ||| ||||||||||||| Sbjct 878466 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATCGTACGATCTAAGGAACC 878525 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 878526 ATAACTGATTTAATGAGCCATTCGCGGTTTC 878556 Score = 95.1 bits (104), Expect = 1e-14 Identities = 77/91 (85%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| ||||||||||| |||| |||||||||||| ||| ||||||||||||| Sbjct 878466 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATCGTACGATCTAAGGAACC 878525 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 878526 ATAACTGATTTAATGAGCCATTCGCGGTTTC 878556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396662401571716