Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5158 138 3e-27 seq53685 125 2e-23 seq48117 114 3e-20 >seq5158 Length=501596 Score = 138 bits (152), Expect = 3e-27 Identities = 171/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||| || | |||| ||||| ||||| | ||| || || ||||| || ||||| Sbjct 429104 TGTCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCA 429163 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| ||||| || ||||| | ||||| || || ||||| |||||||| || ||| Sbjct 429164 GAGAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGG---TCT 429220 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| ||||||||||| ||||||||||| || ||||| ||||| ||||| || | | Sbjct 429221 GGGGGAATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGT 429280 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || ||||| || || || || || || || ||||| Sbjct 429281 TCAACCTCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 429333 Score = 129 bits (142), Expect = 1e-24 Identities = 162/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 |||| ||||| ||||| | ||| || || ||||| || ||||| | || ||||| Sbjct 429344 AGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGG 429403 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCT 288372 || ||||| | ||||| || || ||||| |||||||| || |||||| |||||| Sbjct 429404 CCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGG---TCTGGGGGAATTCCT 429460 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 ||||| ||||||||||| || ||||| ||||| ||||| || | ||| || || || Sbjct 429461 TCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGG 429520 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| || || || || || || || ||||| Sbjct 429521 GTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 429561 Score = 129 bits (142), Expect = 1e-24 Identities = 162/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 |||| ||||| ||||| | ||| || || ||||| || ||||| | || ||||| Sbjct 429572 AGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGG 429631 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCT 288372 || ||||| | ||||| || || ||||| |||||||| || |||||| |||||| Sbjct 429632 CCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGG---TCTGGGGGAATTCCT 429688 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 ||||| ||||||||||| || ||||| ||||| ||||| || | ||| || || || Sbjct 429689 TCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGG 429748 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| || || || || || || || ||||| Sbjct 429749 GTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 429789 Score = 129 bits (142), Expect = 1e-24 Identities = 162/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 |||| ||||| ||||| | ||| || || ||||| || ||||| | || ||||| Sbjct 429800 AGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGG 429859 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCT 288372 || ||||| | ||||| || || ||||| |||||||| || |||||| |||||| Sbjct 429860 CCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGG---TCTGGGGGAATTCCT 429916 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 ||||| ||||||||||| || ||||| ||||| ||||| || | ||| || || || Sbjct 429917 TCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGG 429976 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| || || || || || || || ||||| Sbjct 429977 GTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 430017 Score = 129 bits (142), Expect = 1e-24 Identities = 162/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 |||| ||||| ||||| | ||| || || ||||| || ||||| | || ||||| Sbjct 430028 AGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGG 430087 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCT 288372 || ||||| | ||||| || || ||||| |||||||| || |||||| |||||| Sbjct 430088 CCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGG---TCTGGGGGAATTCCT 430144 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 ||||| ||||||||||| || ||||| ||||| ||||| || | ||| || || || Sbjct 430145 TCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGG 430204 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| || || || || || || || ||||| Sbjct 430205 GTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 430245 Score = 120 bits (132), Expect = 7e-22 Identities = 160/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 |||| ||||| ||||| | ||| || || ||||| || ||||| | || ||||| Sbjct 430256 AGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGG 430315 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCT 288372 || ||||| | || || || || ||||| |||||||| || |||||| |||||| Sbjct 430316 CCATCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGG---TCTGGGGGAATTCCT 430372 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 ||||| ||||||||||| || || || ||||| ||||| || | ||| || || || Sbjct 430373 TCTTTGTCCTGGATTTTAGCCTTTACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGG 430432 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || || || || || || || |||||||| Sbjct 430433 GTGATAGTTTTTCCTGTGAGGGTTTTTACAAAGATCTGCAT 430473 >seq53685 Length=437 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | | ||| || ||||| | || ||| |||||||| || || || | Sbjct 198 CCACCACGTAAACGAAGGACAAGATGTAAAGTAGATTCCTTTTGGATGTTGTAATCAGAA 257 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||||||||| || || ||||| || ||||| ||||| |||| Sbjct 258 AGGGTACGACCATCTTCTAATTGCTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGG 317 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||| || ||||| ||||| || ||||| |||| ||| ||||| || Sbjct 318 ATACCTTCCTTATCTTGAATTTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAACC 377 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || || || || ||||| || || ||||| Sbjct 378 TCAAGGGTAATGGTCTTACCCGTAAGGGTTTTGACAAAGATTTGCAT 424 >seq48117 Length=374 Score = 114 bits (126), Expect = 3e-20 Identities = 168/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||| | ||| ||| |||||||| || ||||| | Sbjct 122 CCACCACGAAGACGGAGAACAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAA 181 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || | ||||||||||| || || ||||| || | ||| |||||| ||| Sbjct 182 AGAGTACGGTCATCTTCTAATTGCTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGA 241 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || || ||||| ||| || || || || | || |||| ||||| || Sbjct 242 ATACCTTCCTTTTCTTGGATCTTTTGC-TTAACATTAACAATGCTATCGGAAGATTCAAC 300 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTA 288480 || || || || ||||| ||||| || ||||| || || |||||||||||| || Sbjct 301 CTCAAGGGTTATAGTCTTTCCGGTAAGGGTCTTTACAAAAATCTGCATTATGATA 355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178405080372124