Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq53685 122 6e-23 seq48397 114 9e-21 seq48117 98.7 7e-16 seq5158 93.3 3e-14 seq4225 87.8 1e-12 >seq53685 Length=437 Score = 122 bits (134), Expect = 6e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15039 ||||| || ||||| ||||||||||| || | | | ||||||||||| || ||| Sbjct 228 GTAGATTCCTTTTGGATGTTGTAATCAGAAAGGGTACGACCATCTTCTAATTGCTTACCA 287 Query 15040 GCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTT 15099 ||| | || | ||| |||||||| ||| || |||||||| || |||||| ||| Sbjct 288 GCGAAAATAAGACGTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGAATTTTAGCTTTG 347 Query 15100 ACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTT 15159 ||| |||| ||||| ||| ||| || || | ||||||||| ||||| || || ||| Sbjct 348 ACATTTTCAATAGTGTCGGAGGATTCAACCTCAAGGGTAATGGTCTTACCCGTAAGGGTT 407 Query 15160 TTTACAAAAATTTGCAT 15176 || ||||| |||||||| Sbjct 408 TTGACAAAGATTTGCAT 424 >seq48397 Length=377 Score = 114 bits (126), Expect = 9e-21 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| ||||| || ||||| |||||||| || || |||| | |||||||||||| Sbjct 146 TGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGGGTTCTGTCATCTTCTAATTGT 205 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | || ||||| |||||||| |||||| |||||||| || ||| ||| Sbjct 206 TTACCGGCGAAAATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTTTCTTGAATCTTG 265 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | || ||| | | ||| | ||| | || || || | ||| || || || || || Sbjct 266 TTCTTAACATTGACAATACTGTCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTA 325 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 || ||||| || ||||||||||| || Sbjct 326 AGGGTTTTGACGAAAATTTGCATCTT 351 >seq48117 Length=374 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| ||||| || || ||||| |||||||| || ||| | | | ||||| Sbjct 139 AACAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGGTCATCTTC 198 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC--A 15084 |||||| || |||||| | || ||||| ||||| || |||||| |||||||| || Sbjct 199 TAATTGCTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTTTCTTG 258 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 | |||||| || ||| | | || ||||| | ||| || || | ||| || || Sbjct 259 GATCTTTTGC--TTAACATTAACAATGCTATCGGAAGATTCAACCTCAAGGGTTATAGTC 316 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || ||||||||||| ||||| Sbjct 317 TTTCCGGTAAGGGTCTTTACAAAAATCTGCAT 348 >seq5158 Length=501596 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || || || || |||||||| || ||| | | | ||||| | || Sbjct 429130 ATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTGCGGCCATCTTCCAGCTG 429189 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| ||||| | || | |||||| ||||| ||||||||||| ||||| ||||| Sbjct 429190 TTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATTTT 429249 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| |||| |||| || ||| || || | ||| |||||||| ||||| Sbjct 429250 AGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGGGTGATGGTTTTCCCTGT 429309 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||||||||| |||||||| Sbjct 429310 GAGGGTTTTTACAAAGATTTGCAT 429333 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || || || || |||||||| || || | | | ||||| | || Sbjct 429358 ATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCCAGCTG 429417 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| ||||| | || | |||||| ||||| ||||||||||| ||||| ||||| Sbjct 429418 TTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATTTT 429477 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| |||| |||| || ||| || || | ||| |||||||| ||||| Sbjct 429478 AGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGGGTGATGGTTTTCCCTGT 429537 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||||||||| |||||||| Sbjct 429538 GAGGGTTTTTACAAAGATTTGCAT 429561 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || || || || |||||||| || || | | | ||||| | || Sbjct 429586 ATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCCAGCTG 429645 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| ||||| | || | |||||| ||||| ||||||||||| ||||| ||||| Sbjct 429646 TTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATTTT 429705 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| |||| |||| || ||| || || | ||| |||||||| ||||| Sbjct 429706 AGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGGGTGATGGTTTTCCCTGT 429765 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||||||||| |||||||| Sbjct 429766 GAGGGTTTTTACAAAGATTTGCAT 429789 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || || || || |||||||| || || | | | ||||| | || Sbjct 429814 ATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCCAGCTG 429873 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| ||||| | || | |||||| ||||| ||||||||||| ||||| ||||| Sbjct 429874 TTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATTTT 429933 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| |||| |||| || ||| || || | ||| |||||||| ||||| Sbjct 429934 AGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGGGTGATGGTTTTCCCTGT 429993 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||||||||| |||||||| Sbjct 429994 GAGGGTTTTTACAAAGATTTGCAT 430017 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || || || || |||||||| || || | | | ||||| | || Sbjct 430042 ATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCCAGCTG 430101 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| ||||| | || | |||||| ||||| ||||||||||| ||||| ||||| Sbjct 430102 TTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATTTT 430161 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| |||| |||| || ||| || || | ||| |||||||| ||||| Sbjct 430162 AGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGGGTGATGGTTTTCCCTGT 430221 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||||||||| |||||||| Sbjct 430222 GAGGGTTTTTACAAAGATTTGCAT 430245 >seq4225 Length=872099 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 || || ||||| || || || || || || |||||||| ||| || ||| || | | Sbjct 368126 AACACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCG--GACAATGTACGTCCAT 368183 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| | ||||| || || | || | |||||| ||||| ||||| |||||||||| Sbjct 368184 CTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATCCCTTCCTTGT 368243 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTT-TCTACGTCTAAGGTAATG 15141 | || ||| ||| ||| | || || | || | || || || || || || ||| Sbjct 368244 CCTGGATCTTGGCTTTGACATTCTCAATGCTGTC-CGATGGCTCCACCTCCAATGTGATG 368302 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| |||| ||| || ||||| |||||||| Sbjct 368303 GTTTTACCAGTCAAAGTCTTGACAAAGATTTGCAT 368337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357031965309530