Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq53685 118 1e-21 seq48397 107 2e-18 seq48117 93.3 4e-14 >seq53685 Length=437 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| | || |||||||||||||| || ||||| | ||| | ||| || Sbjct 216 ACAAGATGTAAAGTAGATTCCTTTTGGATGTTGTAATCAGAAAGGGTACGACCATCTTCT 275 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| || || ||| | || | ||||| ||||| || || || ||||| ||||||||| Sbjct 276 AATTGCTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGA 335 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||||| ||| | |||||||| || || || || || |||| || || Sbjct 336 ATTTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAACCTCAAGGGTAATGGTCTTA 395 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || ||||| ||||| ||||||||| Sbjct 396 CCCGTAAGGGTTTTGACAAAGATTTGCATC 425 >seq48397 Length=377 Score = 107 bits (118), Expect = 2e-18 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || ||||||||||| || || || || | |||| | ||| || Sbjct 140 ACAAGGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGGGTTCTGTCATCTTCT 199 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 |||||||| || ||| | || || ||||| ||||| || ||||| ||||| || |||||| Sbjct 200 AATTGTTTACCGGCGAAAATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTTTCTTGA 259 Query 45252 AT-TTTTTGTT-TGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || || || || | ||| ||||||||||||| || || || || | || | Sbjct 260 ATCTTGTTCTTAACATTGACAATAC--TGTCGGAAGACTCAACCTCAAGGGTTATAGTCT 317 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || || ||||| || |||||||||||| Sbjct 318 TTCCAGTAAGGGTTTTGACGAAAATTTGCATC 349 >seq48117 Length=374 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || |||||||||||||| || || || | || ||| || Sbjct 140 ACAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGGTCATCTTCT 199 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| || || ||| | || || ||||| || || || ||||| ||||| || ||||| Sbjct 200 AATTGCTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTTTCTTGG 259 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||||| || | | | | | |||||||| || || || || || | || || Sbjct 260 ATCTTTTGCTTAACATTAACAATGCTATCGGAAGATTCAACCTCAAGGGTTATAGTCTTT 319 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || ||||||||||| ||||| Sbjct 320 CCGGTAAGGGTCTTTACAAAAATCTGCAT 348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451536178993680