Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq48397 163 6e-35 seq53685 156 9e-33 seq5158 156 9e-33 >seq48397 Length=377 Score = 163 bits (180), Expect = 6e-35 Identities = 166/215 (77%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||||||||| || || |||||||| ||||| || | ||| ||||| ||||||| Sbjct 139 AACAAGGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGGGTTCTGTCATCTTC 198 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | || ||||| ||||| || | |||||||||||||| ||||| ||||| || ||||| Sbjct 199 TAATTGTTTACCGGCGAAAATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTTTCTTG 258 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || | ||| || || |||| |||| ||| || || |||||||| | ||||| Sbjct 259 AATCTTGTTCTTAACATTGACAATACTGTCGGAAGACTCAACCTCAAGGGTTATAGTCTT 318 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT-TTAT 195144 ||| || | ||||| ||||| | |||||| |||| Sbjct 319 TCCAGTAAGGGTTTTGACGAAAATTTGCATCTTAT 353 >seq53685 Length=437 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || | ||| || || ||||| || |||||||| | ||| || | |||||||| Sbjct 216 ACAAGATGTAAAGTAGATTCCTTTTGGATGTTGTAATCAGAAAGGGTACGACCATCTTCT 275 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||||| ||||| ||||| |||||||||||||| || || ||||| || |||||| Sbjct 276 AATTGCTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGA 335 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||||| || ||||| ||||| || ||| || |||||||||| ||||| Sbjct 336 ATTTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAACCTCAAGGGTAATGGTCTTA 395 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || || | |||||| Sbjct 396 CCCGTAAGGGTTTTGACAAAGATTTGCAT 424 >seq5158 Length=501596 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || ||||| || | ||| || | |||||||| Sbjct 430265 ACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCC 430324 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || |||||||| || || |||||||| ||||| ||||||||||| || Sbjct 430325 AGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGG 430384 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || || ||||| | ||| || ||| || |||||||| | || ||| Sbjct 430385 ATTTTAGCCTTTACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGGGTGATAGTTTTT 430444 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | |||||||| || | ||||| Sbjct 430445 CCTGTGAGGGTTTTTACAAAGATCTGCAT 430473 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || ||||| || | ||| || | |||||||| Sbjct 429353 ACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCC 429412 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| ||||| || |||||||| || || |||||||| ||||| ||||||||||| || Sbjct 429413 AGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGG 429472 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || || ||||| | ||| || ||| || |||||||| | || || Sbjct 429473 ATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGGGTGATGGTTTTC 429532 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | |||||||| || | |||||| Sbjct 429533 CCTGTGAGGGTTTTTACAAAGATTTGCAT 429561 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || ||||| || | ||| || | |||||||| Sbjct 429581 ACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCC 429640 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| ||||| || |||||||| || || |||||||| ||||| ||||||||||| || Sbjct 429641 AGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGG 429700 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || || ||||| | ||| || ||| || |||||||| | || || Sbjct 429701 ATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGGGTGATGGTTTTC 429760 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | |||||||| || | |||||| Sbjct 429761 CCTGTGAGGGTTTTTACAAAGATTTGCAT 429789 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || ||||| || | ||| || | |||||||| Sbjct 429809 ACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCC 429868 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| ||||| || |||||||| || || |||||||| ||||| ||||||||||| || Sbjct 429869 AGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGG 429928 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || || ||||| | ||| || ||| || |||||||| | || || Sbjct 429929 ATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGGGTGATGGTTTTC 429988 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | |||||||| || | |||||| Sbjct 429989 CCTGTGAGGGTTTTTACAAAGATTTGCAT 430017 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || ||||| || | ||| || | |||||||| Sbjct 430037 ACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCC 430096 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| ||||| || |||||||| || || |||||||| ||||| ||||||||||| || Sbjct 430097 AGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGG 430156 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || || ||||| | ||| || ||| || |||||||| | || || Sbjct 430157 ATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGGGTGATGGTTTTC 430216 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | |||||||| || | |||||| Sbjct 430217 CCTGTGAGGGTTTTTACAAAGATTTGCAT 430245 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || ||||| || | || || | |||||||| Sbjct 429125 ACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTGCGGCCATCTTCC 429184 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| ||||| || |||||||| || || |||||||| ||||| ||||||||||| || Sbjct 429185 AGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGG 429244 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || || ||||| | ||| || ||| || |||||||| | || || Sbjct 429245 ATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACCTCAAGGGTGATGGTTTTC 429304 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | |||||||| || | |||||| Sbjct 429305 CCTGTGAGGGTTTTTACAAAGATTTGCAT 429333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108306597270686