Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3918 125 8e-24 >seq3918 Length=790838 Score = 125 bits (138), Expect = 8e-24 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 ||||| || ||||| || ||||||||||| || ||||| ||||| | |||||| || Sbjct 707524 ACCAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAATGCAAGTACATGCGAGATG 707583 Query 19405 AAATGTTTTTCATCTGAGGTTAATG-TATTCCAATCATTAATATCTTTAGATAAATCTAC 19463 |||||||||||||| | || | | | | ||| | || || ||||| || | |||||| Sbjct 707584 AAATGTTTTTCATC-GTCCTTCAGGTTCTCCCAGTGGTTCATGTCTTTGGACAGATCTAC 707642 Query 19464 TTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATA 19523 ||| ||| | ||||| || || || ||||| ||||| ||||| ||||| || || | || Sbjct 707643 TTCCTCAGCAGTCCAGAAGGAGGCTTCTGCCTTTTTGTACATCTTCCAAATGTCGTGGTA 707702 Query 19524 TTGTATAGGAAATATAACAAA 19544 | || ||||||| |||||| Sbjct 707703 CTTGATGGGAAATACAACAAA 707723 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || || ||||| || || || ||||| | ||||||||| | ||| || || | Sbjct 705759 CCTCATCCCTGCTTATTAACTCGTTGCTGAATGTAAGACCAGGCATAATTCCCCTCTTCT 705818 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| | |||||| ||||| ||||| || |||||||| || || |||| Sbjct 705819 TCAGCCAGAATATGGCAGCAAAGCTACCAGAGAAGAAAATCCCTTCTACAGCAGCGAAAG 705878 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 | | | ||| || || | | ||| | | |||||| || | |||||||||| Sbjct 705879 CTATAACTCTCTCAGCAAAGTCGGAATCTTGGTCCCCAATCCAGTTGATGGCCCAATCAG 705938 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 |||||||||| ||||||||||| ||||| || | ||| || || Sbjct 705939 CCTTCTTTTTGACACATGGCATGGTCTCAATGGCATTGAACAG 705981 Score = 93.3 bits (102), Expect = 5e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 19234 TATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAAT 19293 |||| || || | ||||||||||||||| || ||||| || || ||||| || || ||| Sbjct 706245 TATGTGTCGATAAGTAAACTGTACATTTCAGAGTGAATGTTCTCCATAGCTATTTGGAAT 706304 Query 19294 CCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACC 19347 ||||| |||||||||||||||||| || ||||| | | ||||| || ||| Sbjct 706305 CCGTAGAAACATCTTGCTTCTGTTGCTTGAACTTCTTTGCTGAATCTCTCCACC 706358 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 18654 ATTCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCC 18713 |||||| |||||||| || || ||||| |||||| ||| ||||||||||| || ||||| Sbjct 704800 ATTCATAACTCCCATCTTCTGGTATTCTCCAACTCGTTTCTCAAAGAAATTGGTCTTTCC 704859 Query 18714 CTCTAATGATATACATTCCATAAAATCAAATGGATTTT 18751 || ||||| || |||||||| |||||||| |||| Sbjct 704860 TTCCAATGAGATCTGCTCCATAAAGTCAAATGGGTTTT 704897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561528015135120