Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq5158 84.2 2e-11 >seq5158 Length=501596 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| | || || |||||||| ||| || ||||| ||| Sbjct 429333 ATGCAAATCTTTGTAAAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCA 429274 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | || | ||| |||||| |||||||| ||| | ||| ||| || Sbjct 429273 GACTCTATTGAAAATGTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAG 429214 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT 28709 ||| | ||||||||||| || ||||| |||||||| Sbjct 429213 CAGCGTCTTATCTTTGCTGGTAAACAGCTGGAAGAT 429178 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| | || || |||||||| ||| || ||||| ||| Sbjct 429561 ATGCAAATCTTTGTAAAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCA 429502 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | || | ||| |||||| |||||||| ||| | ||| ||| || Sbjct 429501 GACTCTATTGAAAATGTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAG 429442 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 ||| | ||||||||||| || ||||| |||||||| | | ||| | | || || | Sbjct 429441 CAGCGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACACTTT--CTGACTACA 429384 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||| || || || || || || || | ||| | || | | |||||||| Sbjct 429383 ACATCCAGAAGGAGTCCACACTCCATCTTGTACTCCGACTGAGGGGAGGGAT 429332 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| | || || |||||||| ||| || ||||| ||| Sbjct 429789 ATGCAAATCTTTGTAAAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCA 429730 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | || | ||| |||||| |||||||| ||| | ||| ||| || Sbjct 429729 GACTCTATTGAAAATGTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAG 429670 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 ||| | ||||||||||| || ||||| |||||||| | | ||| | | || || | Sbjct 429669 CAGCGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACACTTT--CTGACTACA 429612 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||| || || || || || || || | ||| | || | | |||||||| Sbjct 429611 ACATCCAGAAGGAGTCCACACTCCATCTTGTACTCCGACTGAGGGGAGGGAT 429560 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| | || || |||||||| ||| || ||||| ||| Sbjct 430017 ATGCAAATCTTTGTAAAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCA 429958 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | || | ||| |||||| |||||||| ||| | ||| ||| || Sbjct 429957 GACTCTATTGAAAATGTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAG 429898 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 ||| | ||||||||||| || ||||| |||||||| | | ||| | | || || | Sbjct 429897 CAGCGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACACTTT--CTGACTACA 429840 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||| || || || || || || || | ||| | || | | |||||||| Sbjct 429839 ACATCCAGAAGGAGTCCACACTCCATCTTGTACTCCGACTGAGGGGAGGGAT 429788 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| | || || |||||||| ||| || ||||| ||| Sbjct 430245 ATGCAAATCTTTGTAAAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCA 430186 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | || | ||| |||||| |||||||| ||| | ||| ||| || Sbjct 430185 GACTCTATTGAAAATGTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAG 430126 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 ||| | ||||||||||| || ||||| |||||||| | | ||| | | || || | Sbjct 430125 CAGCGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACACTTT--CTGACTACA 430068 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||| || || || || || || || | ||| | || | | |||||||| Sbjct 430067 ACATCCAGAAGGAGTCCACACTCCATCTTGTACTCCGACTGAGGGGAGGGAT 430016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424976249597382